Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.0e-218 763.1 378 100.0
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 9.9e-121 437.6 512 49.0
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 3.8e-120 435.6 491 49.5
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.4e-119 433.7 488 50.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 1.6e-118 430.3 511 47.9
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 6.0e-118 428.3 516 47.7
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.0e-117 427.6 502 48.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 2.3e-117 426.4 488 47.7
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 2.3e-117 426.4 511 48.1
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 1.1e-116 424.1 512 48.0
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.5e-116 423.7 496 47.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 3.3e-116 422.5 498 47.8
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 4.3e-116 422.2 499 46.7
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 5.6e-116 421.8 503 46.9
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 9.6e-116 421.0 498 47.2
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.3e-115 420.6 503 46.5
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 1.6e-115 420.2 511 46.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.6e-115 420.2 511 46.6
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 3.6e-115 419.1 511 46.2
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 3.6e-115 419.1 503 46.3
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 4.8e-115 418.7 501 46.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 6.2e-115 418.3 498 46.8
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 8.1e-115 417.9 503 47.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 8.1e-115 417.9 503 46.7
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 1.1e-114 417.5 513 46.8
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 1.4e-114 417.2 494 48.0
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 1.8e-114 416.8 501 46.3
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.4e-114 416.4 496 47.2
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 4.0e-114 415.6 496 47.8
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 5.3e-114 415.2 496 47.6
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 5.3e-114 415.2 503 46.1
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 6.9e-114 414.8 512 46.7
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 9.0e-114 414.5 513 46.6
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 9.0e-114 414.5 503 46.3
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 9.0e-114 414.5 512 46.7
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 9.0e-114 414.5 481 49.1
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 9.0e-114 414.5 493 46.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 1.2e-113 414.1 511 47.0
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.2e-113 414.1 515 46.6
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 1.2e-113 414.1 515 46.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 1.2e-113 414.1 512 46.7
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 1.2e-113 414.1 496 47.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 1.5e-113 413.7 504 46.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 2.0e-113 413.3 511 46.0
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 2.0e-113 413.3 515 46.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.6e-113 412.9 496 47.6
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 2.6e-113 412.9 511 46.6
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.6e-113 412.9 513 46.4
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 2.6e-113 412.9 503 45.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 2.6e-113 412.9 491 47.5
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 2.6e-113 412.9 511 45.4
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 3.4e-113 412.5 513 46.2
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 4.5e-113 412.1 513 46.0
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.5e-113 412.1 513 46.0
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 5.8e-113 411.8 503 46.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 7.6e-113 411.4 513 46.4
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 7.6e-113 411.4 511 45.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.3e-112 410.6 512 45.7
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.3e-112 410.6 499 46.3
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 1.7e-112 410.2 515 45.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 2.2e-112 409.8 473 48.2
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 2.2e-112 409.8 498 46.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 2.2e-112 409.8 533 44.5
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 2.9e-112 409.5 511 46.2
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 2.9e-112 409.5 492 47.2
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 2.9e-112 409.5 499 45.7
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.9e-112 409.5 489 46.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 3.8e-112 409.1 513 45.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 6.4e-112 408.3 506 46.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 6.4e-112 408.3 511 45.4
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 8.4e-112 407.9 483 47.4
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 8.4e-112 407.9 499 46.3
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 8.4e-112 407.9 501 46.3
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.4e-111 407.1 513 45.6
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 1.4e-111 407.1 514 45.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.9e-111 406.8 488 46.5
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 1.9e-111 406.8 506 46.2
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.4e-111 406.4 505 46.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.4e-111 406.4 513 45.8
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 3.2e-111 406.0 488 46.3
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 3.2e-111 406.0 496 46.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 3.2e-111 406.0 512 46.5
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 5.5e-111 405.2 511 45.8
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 5.5e-111 405.2 511 44.4
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 7.1e-111 404.8 507 46.2
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 7.1e-111 404.8 496 46.6
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 7.1e-111 404.8 496 46.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 7.1e-111 404.8 488 45.9
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.1e-111 404.8 513 45.8
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 7.1e-111 404.8 496 46.6
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 9.3e-111 404.4 534 44.0
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 9.3e-111 404.4 512 45.7
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 9.3e-111 404.4 527 43.8
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.2e-110 404.1 512 45.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.1e-110 403.3 513 45.6
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 3.5e-110 402.5 505 45.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 4.6e-110 402.1 496 46.4
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 4.6e-110 402.1 496 46.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 4.6e-110 402.1 505 46.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.0e-110 401.7 493 46.2
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.0e-109 401.0 499 45.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 1.0e-109 401.0 511 45.2
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.3e-109 400.6 447 48.8
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.8e-109 400.2 499 45.9
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 2.3e-109 399.8 488 46.5
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.3e-109 399.8 489 46.4
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 3.0e-109 399.4 499 45.5
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.9e-109 399.1 536 44.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 3.9e-109 399.1 476 46.4
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.7e-109 398.3 488 45.9
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 8.7e-109 397.9 490 45.9
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 3.3e-108 396.0 499 45.3
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.3e-107 394.0 537 43.6
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 6.2e-107 391.7 499 44.7
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 8.1e-107 391.3 499 44.5
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 2.6e-105 386.3 506 43.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.4e-104 381.3 470 46.0
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.4e-103 380.6 486 42.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.3e-103 377.9 511 42.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 2.1e-102 376.7 506 42.9
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.3e-101 373.2 538 41.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-100 370.9 482 45.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 4.3e-100 369.0 509 41.7
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.6e-99 367.1 495 42.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 6.3e-99 365.2 502 42.0
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.0e-96 355.5 490 41.4
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.9e-95 353.6 488 41.6
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.2e-95 352.8 488 41.4
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 4.3e-92 342.4 489 40.1
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 9.7e-92 341.3 496 39.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.8e-90 337.0 453 44.6
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 2.0e-89 333.6 451 44.3
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.4e-87 327.4 465 40.4
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.5e-87 326.6 503 39.4
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 2.5e-87 326.6 499 39.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 4.2e-87 325.9 512 40.6
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 6.1e-86 322.0 513 40.4
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 6.7e-85 318.5 502 40.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.1e-84 317.8 513 40.2
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.0e-84 317.0 450 42.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 3.3e-84 316.2 486 39.9
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.7e-83 313.9 457 40.0
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.4e-82 310.8 489 39.7
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 2.2e-80 303.5 473 36.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.5e-79 300.1 204 70.6
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.4e-79 298.1 513 37.8
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.4e-77 294.3 466 36.1
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 7.4e-76 288.5 475 34.9
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.1e-74 282.7 469 36.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.0e-73 280.4 281 56.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 5.9e-73 278.9 498 34.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-60 238.0 123 95.1
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 7.5e-52 208.8 472 30.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 8.0e-46 188.7 323 38.4
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 8.9e-45 185.3 429 31.7
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.5e-44 184.5 133 64.7
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.5e-41 173.3 136 61.0
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.4e-37 161.4 212 39.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 9.5e-31 138.7 191 36.1
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.2e-26 123.6 173 35.3
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 9.5e-23 112.1 204 30.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-20 105.1 68 70.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 3.2e-18 97.1 122 41.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.9e-15 87.8 226 33.2
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 5.6e-15 86.3 112 41.1
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 9.6e-15 85.5 68 64.7
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 7.8e-09 65.9 70 45.7
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 8.7e-08 62.4 36 75.0


User provided reference genes

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