Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 9.0e-254 879.8 452 100.0
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 3.8e-236 821.2 452 92.7
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 8.7e-148 527.7 453 61.1
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.7e-135 486.9 462 56.9
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.2e-133 480.7 462 56.1
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 3.9e-132 475.7 465 55.3
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 1.5e-131 473.8 464 55.4
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 1.5e-131 473.8 463 54.9
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 1.7e-130 470.3 461 55.3
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 8.2e-130 468.0 465 54.8
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 1.8e-129 466.8 464 54.1
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 3.1e-129 466.1 451 55.7
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 1.2e-128 464.2 463 52.9
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 2.6e-128 463.0 464 53.7
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 7.7e-128 461.5 464 54.3
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 2.2e-127 459.9 464 55.2
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 6.5e-127 458.4 464 53.9
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 8.5e-127 458.0 466 55.2
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 3.2e-126 456.1 462 55.0
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 3.2e-126 456.1 463 53.8
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 4.2e-126 455.7 463 54.9
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 5.5e-126 455.3 477 53.5
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 1.2e-125 454.1 471 52.9
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 2.7e-125 453.0 465 55.1
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 2.7e-125 453.0 451 53.7
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 1.4e-124 450.7 464 54.3
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 1.4e-124 450.7 466 54.9
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 1.4e-124 450.7 470 53.4
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 1.8e-124 450.3 463 54.0
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.0e-124 449.5 465 54.6
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 3.9e-124 449.1 466 52.8
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 6.7e-124 448.4 464 54.7
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 8.8e-124 448.0 463 53.8
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 8.8e-124 448.0 464 53.2
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 2.0e-123 446.8 464 53.0
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 2.0e-123 446.8 464 53.4
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 2.6e-123 446.4 463 52.9
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 1.3e-122 444.1 452 52.7
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 1.7e-122 443.7 466 52.6
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 1.7e-122 443.7 471 52.7
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 2.2e-122 443.4 465 55.1
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 3.7e-122 442.6 452 53.3
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 4.8e-122 442.2 471 52.7
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 4.8e-122 442.2 466 52.4
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 4.8e-122 442.2 452 53.1
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 4.8e-122 442.2 463 52.7
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 6.3e-122 441.8 459 51.9
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 8.2e-122 441.4 469 52.5
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 8.2e-122 441.4 461 52.7
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 1.1e-121 441.0 466 52.4
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 1.1e-121 441.0 465 53.3
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 1.1e-121 441.0 509 50.7
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.8e-121 440.3 459 51.9
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 1.8e-121 440.3 467 51.8
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 2.4e-121 439.9 453 54.5
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 2.4e-121 439.9 467 53.1
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 3.1e-121 439.5 465 53.1
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 4.1e-121 439.1 461 52.7
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 5.3e-121 438.7 464 52.6
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 9.1e-121 438.0 460 52.2
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 1.2e-120 437.6 456 53.3
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 1.2e-120 437.6 467 53.1
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 1.5e-120 437.2 452 52.4
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 2.0e-120 436.8 453 52.5
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 2.6e-120 436.4 465 52.3
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 2.6e-120 436.4 451 52.3
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 3.4e-120 436.0 452 52.7
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 4.5e-120 435.6 453 52.8
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 5.9e-120 435.3 465 51.8
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 5.9e-120 435.3 465 51.2
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 3.8e-119 432.6 463 51.8
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 3.8e-119 432.6 427 54.1
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 6.5e-119 431.8 493 49.5
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 3.2e-118 429.5 462 52.8
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 4.2e-118 429.1 461 51.4
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 5.5e-118 428.7 459 53.2
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 1.2e-117 427.6 462 50.4
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 2.1e-117 426.8 464 51.9
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 2.1e-117 426.8 464 51.3
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 2.7e-117 426.4 452 53.1
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 2.7e-117 426.4 457 52.5
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 3.6e-117 426.0 467 50.5
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 4.7e-117 425.6 461 51.0
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 5.2e-116 422.2 461 52.5
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 6.7e-116 421.8 440 52.7
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 4.4e-115 419.1 586 43.5
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 7.4e-115 418.3 464 50.2
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 1.3e-114 417.5 459 52.5
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 1.3e-114 417.5 483 49.7
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 1.7e-114 417.2 459 51.9
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 2.2e-114 416.8 416 54.8
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 3.1e-113 412.9 486 49.6
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 4.1e-113 412.5 459 52.3
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 7.0e-113 411.8 425 53.4
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 9.1e-113 411.4 527 46.1
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 1.6e-112 410.6 459 51.6
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 4.5e-112 409.1 408 54.2
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 7.7e-112 408.3 462 51.3
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 7.7e-112 408.3 459 50.1
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 2.9e-111 406.4 459 51.6
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 5.0e-111 405.6 553 44.3
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 2.5e-110 403.3 462 50.6
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 1.6e-109 400.6 459 50.8
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 1.6e-109 400.6 459 50.8
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 3.0e-108 396.4 462 50.4
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.0e-108 396.0 389 54.5
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 1.2e-107 394.4 456 49.8
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.5e-107 394.0 405 49.9
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 1.3e-106 391.0 481 48.6
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 6.3e-106 388.7 404 53.7
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 2.1e-101 373.6 486 45.7
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 9.8e-99 364.8 561 41.5
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 3.1e-97 359.8 351 52.1
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 9.5e-94 348.2 348 53.2
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 6.1e-93 345.5 464 45.3
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 5.4e-89 332.4 466 44.8
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 1.0e-87 328.2 461 44.3
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 2.9e-87 326.6 464 42.2
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 1.1e-86 324.7 397 47.1
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 5.2e-84 315.8 463 43.2
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-81 307.4 351 48.4
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 3.0e-79 300.1 458 41.3
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.4e-73 280.4 460 38.9
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 5.1e-71 272.7 491 35.0
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 4.7e-61 239.6 322 47.5
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 6.8e-60 235.7 285 45.3
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 2.9e-58 230.3 287 42.5
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 3.8e-58 229.9 446 37.4
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.9e-57 227.6 291 43.3
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 5.4e-57 226.1 305 44.3
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 4.9e-50 203.0 393 36.1
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 2.3e-47 194.1 207 51.2
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.1e-44 185.3 417 34.3
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 1.4e-44 184.9 159 61.0
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 1.2e-40 171.8 147 60.5
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 9.3e-33 145.6 151 51.7
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 9.3e-33 145.6 151 51.7
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 3.1e-28 130.6 112 50.0
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 7.6e-27 125.9 125 48.0
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 1.9e-25 121.3 97 61.9
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 9.3e-25 119.0 316 30.4
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 3.5e-24 117.1 288 32.6
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 2.2e-18 97.8 65 67.7
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 7.4e-14 82.8 122 40.2
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 1.7e-10 71.6 347 25.4
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 5.0e-10 70.1 120 37.5
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 8.5e-10 69.3 141 33.3
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.5e-09 66.6 124 33.1


User provided reference genes

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