Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 4.0e-108 394.8 204 100.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.8e-55 219.9 198 58.6
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.1e-55 218.4 198 58.6
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 3.1e-52 209.1 196 55.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.9e-52 208.0 200 58.5
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.9e-52 208.0 200 58.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.5e-51 205.3 197 56.9
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 5.8e-51 204.9 198 57.6
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 7.6e-51 204.5 198 56.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.3e-50 203.8 198 57.1
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.9e-50 202.6 196 55.6
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.8e-50 202.2 198 56.6
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 8.4e-50 201.1 197 55.8
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 8.4e-50 201.1 200 56.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.9e-49 199.9 197 56.9
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 2.5e-49 199.5 188 58.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 9.3e-49 197.6 198 57.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 3.5e-48 195.7 198 55.6
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 3.5e-48 195.7 202 56.4
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.6e-48 195.3 202 55.9
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.0e-48 194.9 173 63.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 7.9e-48 194.5 200 56.5
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.3e-47 193.7 198 54.5
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.3e-47 193.7 200 53.5
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.8e-47 193.4 198 53.5
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.3e-47 193.0 195 55.9
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 3.0e-47 192.6 198 54.0
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 3.0e-47 192.6 199 55.3
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.1e-47 191.8 201 55.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.7e-47 191.4 201 55.2
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 6.7e-47 191.4 199 55.8
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.7e-47 191.4 198 54.0
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 8.7e-47 191.0 198 55.1
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 8.7e-47 191.0 198 53.5
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.1e-46 190.7 197 51.8
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.9e-46 189.9 197 53.3
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 2.5e-46 189.5 202 51.5
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.3e-46 189.1 203 53.2
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 5.7e-46 188.3 200 50.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 7.4e-46 188.0 198 53.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 9.6e-46 187.6 202 53.0
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.3e-45 187.2 193 53.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.6e-45 186.8 203 53.2
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 4.8e-45 185.3 194 55.7
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.4e-44 183.7 199 53.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.8e-44 183.3 198 51.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.8e-44 183.3 197 52.3
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.8e-44 183.3 201 53.7
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.8e-44 183.3 198 51.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 2.4e-44 183.0 198 51.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.1e-44 182.2 207 50.7
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.3e-44 181.8 195 56.4
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 5.3e-44 181.8 189 52.9
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 6.9e-44 181.4 193 51.3
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 9.0e-44 181.0 201 52.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 2.0e-43 179.9 201 49.8
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.0e-43 179.9 205 50.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 3.4e-43 179.1 165 60.0
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 7.6e-43 177.9 203 50.7
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 7.6e-43 177.9 204 50.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.7e-42 176.8 211 49.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.9e-42 176.0 207 48.8
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 5.0e-42 175.3 179 55.3
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 6.5e-42 174.9 204 50.5
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.1e-41 174.1 199 50.8
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.4e-41 173.7 201 50.7
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 5.5e-41 171.8 191 53.9
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.5e-41 171.8 199 50.3
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 5.5e-41 171.8 199 49.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 9.3e-41 171.0 197 53.3
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.7e-40 169.5 199 49.2
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.6e-40 169.1 197 52.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 3.6e-40 169.1 196 50.0
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 6.1e-40 168.3 198 47.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 6.1e-40 168.3 197 51.3
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.3e-39 166.4 198 47.0
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 3.0e-39 166.0 147 57.8
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.9e-39 165.6 205 46.8
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 5.1e-39 165.2 197 49.7
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.5e-38 163.7 197 49.2
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 3.3e-38 162.5 198 48.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.3e-38 162.5 197 49.2
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.7e-37 159.1 201 47.8
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 6.3e-37 158.3 201 46.3
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 6.3e-37 158.3 216 45.8
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 8.2e-37 157.9 190 46.3
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 2.4e-36 156.4 191 47.6
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.1e-36 156.0 196 50.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 4.1e-36 155.6 197 45.7
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 6.9e-36 154.8 190 46.3
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.5e-35 153.7 190 44.7
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.5e-35 153.7 190 44.7
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.6e-35 152.9 198 43.9
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 4.5e-35 152.1 190 44.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 4.5e-35 152.1 199 45.7
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.0e-34 151.0 190 44.7
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-34 150.6 192 43.8
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.3e-34 150.6 192 43.8
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.3e-34 150.6 199 46.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.7e-34 150.2 192 44.3
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 1.7e-34 150.2 192 44.3
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 3.8e-34 149.1 199 46.2
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 3.8e-34 149.1 199 45.7
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 6.5e-34 148.3 190 43.7
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.4e-33 147.1 204 46.6
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 4.2e-33 145.6 127 57.5
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 5.5e-33 145.2 190 44.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 5.5e-33 145.2 174 47.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.0e-31 141.0 213 40.4
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.4e-31 140.6 190 42.6
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.9e-31 139.0 213 39.9
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 5.1e-31 138.7 190 42.6
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 8.8e-31 137.9 190 41.1
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 4.8e-29 132.1 190 41.6
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 6.5e-26 121.7 119 58.8
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.1e-24 116.7 111 60.4
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.2e-21 106.7 81 63.0
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.2e-21 106.7 196 39.8
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-20 103.6 198 34.3
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.8e-20 103.6 192 31.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.4e-20 103.2 191 36.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.6e-19 100.5 181 37.6
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-19 100.5 198 33.8
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.6e-19 100.5 198 33.8
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-19 100.1 182 35.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 5.9e-19 98.6 183 36.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 7.7e-19 98.2 183 35.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.3e-18 97.4 199 33.7
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.9e-17 93.6 190 35.3
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 3.2e-17 92.8 199 35.7
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.4e-15 87.4 142 35.9
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.6e-14 83.2 183 30.1
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 4.8e-13 79.0 96 44.8
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 4.8e-13 79.0 201 31.8
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.1e-09 67.8 80 43.8
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.9e-09 67.0 95 34.7
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.5e-09 66.6 137 39.4
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 3.6e-08 62.8 129 32.6
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 2.6e-06 56.6 116 32.8


User provided reference genes

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