Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.3e-219 766.1 402 100.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.1e-197 691.8 403 91.3
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.6e-121 440.3 383 61.4
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.2e-120 435.3 378 63.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.8e-119 431.8 396 59.8
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.4e-117 425.2 381 60.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.7e-116 422.9 396 59.3
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.3e-115 420.6 399 58.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.9e-115 419.1 383 60.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 5.1e-115 418.7 383 59.5
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.6e-115 418.3 379 59.6
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.5e-114 416.4 382 58.4
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 7.3e-114 414.8 398 58.0
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 7.3e-114 414.8 382 60.2
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 7.3e-114 414.8 392 58.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.2e-113 414.1 380 59.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.6e-113 413.7 401 59.4
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.1e-113 413.3 392 58.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.6e-113 412.5 402 57.2
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 4.7e-113 412.1 383 60.3
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 8.1e-113 411.4 376 58.0
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.1e-112 411.0 375 57.9
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.8e-112 410.2 381 58.8
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 2.4e-112 409.8 401 56.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.1e-112 409.5 400 56.8
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 3.1e-112 409.5 380 57.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 4.0e-112 409.1 381 59.1
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 5.2e-112 408.7 381 59.1
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.9e-112 408.3 381 57.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 8.9e-112 407.9 362 60.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.2e-111 407.5 386 57.0
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.0e-111 406.8 397 56.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 3.4e-111 406.0 395 56.7
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.4e-111 405.6 385 57.1
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 4.4e-111 405.6 393 56.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.8e-111 405.2 381 59.3
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 9.9e-111 404.4 385 55.8
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.7e-110 403.7 364 60.7
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 3.8e-110 402.5 404 56.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 6.4e-110 401.7 396 56.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 6.4e-110 401.7 378 58.7
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 8.4e-110 401.4 383 59.8
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 8.4e-110 401.4 396 57.1
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-109 401.0 384 58.6
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.1e-109 401.0 382 57.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.9e-109 400.2 384 57.6
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.9e-109 400.2 403 54.3
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.4e-109 399.8 364 60.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.4e-109 399.8 378 58.5
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.4e-109 399.8 384 60.2
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.2e-109 399.4 403 55.6
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.2e-109 399.4 378 58.5
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.2e-109 399.1 364 59.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 7.1e-109 398.3 391 58.1
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 7.1e-109 398.3 378 58.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.1e-109 398.3 378 58.5
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.1e-109 398.3 378 58.5
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 9.3e-109 397.9 363 59.5
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 9.3e-109 397.9 378 58.5
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 9.3e-109 397.9 386 56.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.2e-108 397.5 413 55.7
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.6e-108 397.1 388 57.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.1e-108 396.7 376 56.1
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.7e-108 396.4 414 57.7
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 3.5e-108 396.0 395 56.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 3.5e-108 396.0 385 58.4
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.8e-108 394.8 388 56.7
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.0e-107 394.4 413 57.6
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.0e-107 394.4 369 58.3
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.7e-107 393.7 375 57.1
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-107 393.7 361 59.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.7e-107 393.7 386 57.8
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.7e-107 393.7 376 58.0
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.3e-107 393.3 362 58.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 3.0e-107 392.9 379 57.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.0e-107 392.9 398 55.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 3.9e-107 392.5 361 59.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 5.1e-107 392.1 361 58.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 5.1e-107 392.1 361 58.7
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 6.6e-107 391.7 383 57.4
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 8.7e-107 391.3 377 57.6
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 8.7e-107 391.3 371 55.3
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.1e-106 391.0 363 58.4
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.1e-106 391.0 383 56.7
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.5e-106 390.6 363 59.0
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.9e-106 390.2 388 57.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.5e-106 389.8 397 54.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.3e-106 389.4 416 54.3
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.3e-105 387.5 402 55.2
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.6e-105 387.1 410 57.3
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.8e-105 386.3 361 59.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.6e-105 386.0 420 51.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.8e-105 385.6 395 55.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 8.1e-105 384.8 370 57.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.4e-104 383.3 386 55.2
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.4e-104 383.3 386 55.2
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.1e-104 382.9 385 53.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-103 380.9 365 57.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.5e-103 380.6 383 55.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.5e-103 380.6 386 54.9
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.0e-103 380.2 382 53.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.5e-103 379.0 379 56.2
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.2e-102 376.7 377 55.2
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.9e-102 376.3 345 60.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 6.4e-102 375.2 388 52.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.4e-101 374.0 364 57.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.4e-101 374.0 364 57.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.2e-101 372.9 377 55.4
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.2e-100 370.9 363 57.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.6e-100 370.5 358 57.0
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.1e-100 370.2 366 56.8
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.0e-99 366.3 365 55.6
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 7.4e-98 361.7 362 55.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.6e-97 360.5 384 51.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.8e-97 359.0 370 53.2
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.8e-97 359.0 389 51.7
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.1e-96 356.3 367 52.0
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-92 344.4 394 48.7
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.7e-89 332.8 393 49.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.7e-86 323.9 293 60.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.5e-82 310.1 320 51.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.1e-77 294.7 282 58.9
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 9.7e-66 255.0 310 48.4
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.1e-64 251.5 425 40.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 9.1e-64 248.4 386 40.9
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 6.1e-60 235.7 219 58.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 5.0e-54 216.1 242 51.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.6e-52 211.1 163 66.9
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.7e-52 209.5 216 51.4
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.1e-48 196.8 208 51.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.1e-48 195.3 191 64.4
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 2.7e-47 193.7 142 73.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.5e-42 177.9 291 37.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.5e-42 177.9 145 66.2
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.0e-42 177.6 153 64.1
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.9e-38 163.7 355 33.5
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.2e-36 158.3 204 47.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 7.5e-18 95.9 113 51.3
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.6e-13 79.7 66 59.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.2e-12 76.3 76 51.3
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.8e-10 69.7 316 25.9
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 4.6e-07 60.1 139 33.8


User provided reference genes

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