Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.0e-272 941.8 464 100.0
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 7.3e-174 614.4 330 91.5
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.2e-154 549.7 422 65.4
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.3e-151 540.4 423 65.2
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 6.2e-149 531.6 379 69.4
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 8.1e-149 531.2 404 64.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.2e-147 527.3 378 68.0
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 2.0e-147 526.6 378 68.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.7e-146 523.5 373 68.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.2e-146 523.1 378 67.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.8e-146 522.3 379 67.0
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 8.4e-146 521.2 380 67.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.4e-146 521.2 440 61.1
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-145 520.4 379 67.5
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.9e-145 520.0 425 62.6
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.4e-145 519.6 434 62.9
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.2e-145 518.8 421 62.9
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.2e-145 518.8 447 60.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 7.1e-145 518.1 422 62.8
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.3e-145 517.7 379 66.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.2e-144 517.3 424 63.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.6e-144 516.9 372 67.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.6e-144 516.9 373 65.7
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.1e-144 516.5 379 66.2
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.6e-144 515.4 440 60.5
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.8e-144 514.6 379 66.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-143 513.8 374 67.1
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.3e-143 513.8 424 62.5
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.7e-143 513.5 425 59.5
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 3.0e-143 512.7 374 65.5
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.6e-143 511.5 374 66.8
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.7e-143 511.1 374 66.3
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.1e-142 510.8 381 65.6
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.9e-142 510.0 434 62.0
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.9e-142 510.0 379 66.2
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.9e-142 510.0 372 65.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 3.3e-142 509.2 409 59.9
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 7.3e-142 508.1 382 64.1
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 7.3e-142 508.1 380 65.3
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.3e-141 507.3 384 63.8
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.1e-141 506.5 399 63.2
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.6e-141 505.8 382 64.9
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 4.8e-141 505.4 380 64.5
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 6.2e-141 505.0 370 65.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.8e-140 503.4 388 63.7
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.0e-140 502.3 440 58.4
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.5e-139 500.4 372 64.5
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.0e-139 500.0 435 58.9
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.4e-139 499.2 388 63.1
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 5.8e-139 498.4 420 59.5
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.8e-139 498.4 388 62.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 7.6e-139 498.0 425 59.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 7.6e-139 498.0 443 57.3
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 9.9e-139 497.7 372 64.2
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.7e-138 496.9 447 57.5
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.7e-138 496.9 377 64.7
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 3.8e-138 495.7 377 63.1
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 3.8e-138 495.7 377 63.1
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.9e-138 495.4 374 62.6
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 8.4e-138 494.6 427 59.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.1e-137 494.2 378 61.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.4e-137 493.8 372 62.9
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.9e-137 493.4 414 58.2
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.2e-137 492.7 372 62.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.1e-136 490.0 408 59.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 3.5e-136 489.2 435 58.2
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 4.6e-136 488.8 414 60.9
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 7.9e-136 488.0 413 58.6
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 7.9e-136 488.0 372 62.9
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.0e-135 487.6 422 57.6
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.3e-135 487.3 425 58.6
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.7e-135 486.9 423 58.9
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.0e-135 486.1 374 63.6
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.0e-135 486.1 379 63.6
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 6.6e-135 485.0 418 59.3
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 1.1e-134 484.2 423 58.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.5e-134 483.8 444 58.1
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.9e-134 483.4 370 62.2
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.9e-134 483.4 412 61.2
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 3.3e-134 482.6 443 59.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 4.3e-134 482.3 385 61.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.3e-133 480.7 428 57.2
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.3e-133 480.7 412 59.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-133 480.3 374 63.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.6e-133 479.2 449 55.7
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.1e-132 477.6 380 60.3
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 6.9e-132 474.9 430 56.7
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.2e-131 474.2 447 57.3
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.6e-131 473.0 422 58.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 5.8e-131 471.9 374 63.6
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 5.8e-131 471.9 422 56.6
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 9.9e-131 471.1 435 54.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.7e-130 470.3 438 56.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.2e-130 469.9 419 55.8
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.9e-130 469.5 445 56.4
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.1e-129 467.6 319 70.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.4e-129 467.2 389 61.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.4e-129 466.5 376 61.4
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 7.1e-129 464.9 421 58.0
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 7.1e-129 464.9 419 55.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 9.3e-129 464.5 390 60.0
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 9.3e-129 464.5 390 60.0
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.3e-129 464.5 392 58.9
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 9.3e-129 464.5 408 59.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.7e-128 463.0 437 55.6
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.7e-128 463.0 350 64.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 4.6e-128 462.2 418 57.4
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 4.6e-128 462.2 381 60.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 7.9e-128 461.5 443 56.4
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.8e-127 460.3 344 64.5
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 6.7e-127 458.4 373 60.6
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 5.6e-126 455.3 404 57.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.6e-126 454.5 370 62.7
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.6e-126 454.5 370 62.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.6e-125 453.8 372 62.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 8.1e-125 451.4 418 57.4
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.8e-124 450.3 363 61.4
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 5.3e-124 448.7 427 55.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.2e-123 447.6 342 62.9
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.9e-122 443.0 350 62.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.5e-121 439.9 394 58.4
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 7.1e-121 438.3 351 64.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.6e-120 435.6 394 57.9
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 5.0e-114 415.6 412 52.7
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.6e-109 400.6 370 56.8
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.5e-97 360.1 338 56.2
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.2e-97 359.4 403 50.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.7e-96 355.9 387 49.4
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 3.9e-95 352.8 380 49.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.0e-91 340.5 417 45.3
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 5.0e-90 335.9 272 61.0
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 5.0e-90 335.9 272 61.0
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.5e-65 254.6 234 56.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 8.3e-61 238.8 384 42.7
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 6.6e-58 229.2 189 58.7
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 7.5e-54 215.7 141 69.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.4e-52 210.7 200 54.0
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.3e-49 199.9 170 58.2
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 4.3e-41 173.3 277 39.4
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.3e-34 151.0 106 66.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 9.6e-33 145.6 196 44.9
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-31 142.1 178 48.3
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 9.9e-30 135.6 109 63.3
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 8.4e-29 132.5 99 60.6
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.9e-28 131.3 110 60.0
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 7.1e-12 76.3 52 65.4
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.2e-06 58.9 54 55.6


User provided reference genes

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