Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 6.7e-78 293.9 142 100.0
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.6e-74 282.0 142 94.4
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 4.6e-63 244.6 142 80.3
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 78.9
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 1.1e-61 240.0 142 78.9
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 1.1e-61 240.0 142 78.9
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.5e-61 239.6 142 78.9
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.4e-61 237.3 142 78.2
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 7.4e-61 237.3 140 79.3
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 9.7e-61 236.9 142 79.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.6e-60 236.1 140 77.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 77.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 4.8e-60 234.6 142 78.2
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.8e-59 232.6 142 74.6
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 76.1
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 9.0e-59 230.3 141 74.5
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 74.6
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.2e-58 229.9 142 76.8
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 75.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.3e-57 226.5 140 75.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 72.5
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 76.8
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 73.9
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 77.5
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.2e-57 225.7 143 76.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 76.1
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 74.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 73.9
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 73.2
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 71.8
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 76.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 73.9
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 71.8
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 71.8
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 71.8
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.5e-56 222.2 141 74.5
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 70.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 75.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 3.2e-56 221.9 139 74.8
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 69.7
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 5.5e-56 221.1 141 75.9
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 70.4
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 73.2
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 73.2
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 71.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 72.5
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.2e-56 220.7 142 71.1
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 74.6
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 70.4
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.6e-55 219.5 140 72.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.6e-55 219.5 141 73.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.1e-55 219.2 140 72.1
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 69.7
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.1e-55 219.2 142 71.1
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 72.5
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 3.6e-55 218.4 142 71.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 68.3
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 70.4
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.6e-55 218.0 141 73.8
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 6.1e-55 217.6 142 70.4
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 71.8
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 70.4
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 70.4
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 70.4
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 71.8
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-54 216.9 141 74.5
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-54 216.9 141 74.5
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.0e-54 216.9 141 72.3
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.3e-54 216.5 141 74.5
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.3e-54 216.5 139 74.1
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.3e-54 215.7 141 70.2
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.3e-54 215.7 142 70.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.7
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.7
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 69.7
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 70.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 6.7e-54 214.2 141 70.9
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 8.7e-54 213.8 142 69.7
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 8.7e-54 213.8 142 69.7
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 8.7e-54 213.8 141 70.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 69.0
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 67.6
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.5e-53 212.2 135 74.8
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.3e-53 211.8 142 73.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 3.3e-53 211.8 142 67.6
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.3e-53 211.5 139 72.7
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 66.9
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 6.3e-52 207.6 142 72.5
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.1e-51 206.8 141 68.1
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.4e-51 206.5 141 70.9
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.4e-51 206.5 142 67.6
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 64.8
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.3e-51 204.5 142 66.2
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 9.1e-51 203.8 142 64.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 9.1e-51 203.8 140 67.9
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.2e-50 203.4 170 58.8
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.2e-50 203.4 140 68.6
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.5e-50 203.0 136 66.9
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 1.5e-50 203.0 158 62.7
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.0e-50 202.6 193 56.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.0e-50 202.6 193 56.0
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.4e-50 201.8 140 67.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 67.6
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 4.5e-50 201.4 142 69.7
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.7e-49 199.5 191 52.4
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.7e-49 199.5 141 66.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.9e-49 198.7 138 67.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 5.0e-49 198.0 140 67.1
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 6.5e-49 197.6 142 66.9
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 6.5e-49 197.6 142 69.0
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 6.5e-49 197.6 135 68.9
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 8.5e-49 197.2 142 66.2
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.5e-49 197.2 127 69.3
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 8.5e-49 197.2 141 65.2
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.4e-48 196.4 137 65.7
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 9.4e-48 193.7 142 63.4
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.2e-47 193.4 142 64.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.2e-47 193.4 127 68.5
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.1e-47 192.6 139 69.1
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 63.4
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 1.4e-46 189.9 143 65.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 3.0e-46 188.7 140 65.0
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 3.0e-46 188.7 138 65.2
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 3.9e-46 188.3 142 65.5
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 8.8e-46 187.2 157 59.2
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.1e-45 186.8 127 67.7
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.5e-45 186.4 138 63.8
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 3.3e-45 185.3 144 64.6
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 2.4e-43 179.1 142 61.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 4.1e-43 178.3 117 70.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.0e-42 176.0 175 53.1
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 2.0e-42 176.0 143 61.5
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.7e-41 172.9 142 57.7
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.1e-40 170.2 136 58.8
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.5e-40 167.9 136 57.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.1e-39 166.0 139 61.9
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.3e-38 162.5 141 60.3
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 3.9e-38 161.8 141 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 6.7e-38 161.0 140 53.6
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 6.7e-38 161.0 142 54.9
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.6e-37 159.1 141 56.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.3e-37 158.7 141 56.7
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-36 155.6 138 56.5
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 4.8e-36 154.8 108 67.6
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.2e-34 150.2 285 34.0
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 1.2e-31 140.2 125 52.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 8.2e-28 127.5 132 48.5
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.1e-27 125.6 66 84.8
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.8e-22 107.8 109 54.1
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.8e-22 107.8 109 54.1
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.8e-22 107.8 109 54.1
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.2e-21 107.1 121 47.9
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.0e-21 106.3 67 70.1
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.4e-21 105.5 67 70.1
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 3.4e-21 105.5 80 63.8
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 4.4e-21 105.1 80 62.5
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 1.4e-19 100.1 117 43.6
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 4.1e-19 98.6 95 54.7
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 7.0e-19 97.8 59 71.2
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 7.0e-19 97.8 59 71.2
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 2.3e-17 92.8 109 46.8
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 4.2e-16 88.6 62 62.9
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.8e-15 85.9 112 45.5
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 4.4e-13 78.6 115 43.5
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 5.7e-13 78.2 68 57.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 9.8e-13 77.4 68 57.4
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.3e-12 77.0 77 48.1
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.7e-09 66.6 120 36.7
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 8.6e-09 64.3 40 65.0
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 9.5e-08 60.8 34 76.5
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 2.1e-07 59.7 32 78.1
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.1e-07 59.7 34 73.5
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.1e-07 59.7 46 60.9
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 4.7e-07 58.5 97 40.2
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.3e-06 56.2 38 68.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 5.2e-06 55.1 42 61.9
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 6.8e-06 54.7 71 42.3
Zm00001eb413440 Zea mays HOM05D000646 ORTHO05D000607 6.8e-06 54.7 32 75.0
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 8.9e-06 54.3 38 65.8


User provided reference genes

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