Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.2e-141 504.2 272 100.0
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-69 266.9 267 60.3
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.3e-65 252.3 243 63.0
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-43 181.0 284 48.6
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.3e-41 172.6 252 49.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.3e-37 161.0 287 42.9
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 2.9e-37 159.8 291 41.6
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.9e-37 159.1 304 40.8
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.2e-36 156.4 313 39.3
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 5.4e-36 155.6 287 42.2
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 7.1e-36 155.2 312 38.8
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.7e-35 153.3 282 45.0
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 3.5e-35 152.9 297 42.1
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.6e-35 152.5 292 40.8
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 6.0e-35 152.1 330 38.5
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.0e-35 152.1 286 42.7
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.0e-35 152.1 286 42.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.3e-34 150.2 330 37.3
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.9e-34 149.4 319 39.8
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 5.1e-34 149.1 295 39.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 6.6e-34 148.7 287 39.4
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.6e-34 148.3 301 38.2
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.3e-33 146.4 286 39.5
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.3e-33 146.0 258 43.8
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.6e-33 145.6 277 39.7
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.6e-32 144.1 301 38.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.8e-32 143.3 290 39.0
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.7e-32 142.5 294 38.4
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 6.2e-32 142.1 325 37.2
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 8.1e-32 141.7 262 40.8
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 8.1e-32 141.7 262 40.8
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 8.1e-32 141.7 289 38.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.4e-31 141.0 268 39.9
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.4e-31 140.2 294 38.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.1e-31 139.8 292 40.8
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.2e-31 139.0 294 38.1
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 5.2e-31 139.0 245 44.1
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 5.2e-31 139.0 260 41.9
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 5.2e-31 139.0 296 38.9
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 5.2e-31 139.0 266 43.2
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 6.9e-31 138.7 250 40.4
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.2e-30 137.9 315 35.2
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-30 137.5 298 38.6
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 1.5e-30 137.5 279 40.9
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.0e-30 137.1 265 38.9
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.4e-30 136.0 255 42.0
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 5.8e-30 135.6 264 39.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 9.9e-30 134.8 272 40.1
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 2.2e-29 133.7 285 38.6
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-29 133.3 306 37.3
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.8e-29 132.9 296 36.1
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 3.8e-29 132.9 325 36.3
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 4.9e-29 132.5 290 36.2
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 4.9e-29 132.5 287 36.9
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 6.4e-29 132.1 231 41.6
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 6.4e-29 132.1 275 38.9
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 8.4e-29 131.7 261 41.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.4e-29 131.7 287 39.0
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.1e-28 131.3 260 39.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.4e-28 131.0 295 38.0
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.9e-28 130.6 283 36.4
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.9e-28 130.6 276 36.6
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 4.2e-28 129.4 283 37.1
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 4.2e-28 129.4 250 40.8
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 5.4e-28 129.0 252 38.5
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.1e-28 128.6 276 36.2
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.2e-27 127.9 340 34.4
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.6e-27 127.5 292 35.6
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.1e-27 127.1 301 35.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 3.5e-27 126.3 290 40.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 4.6e-27 125.9 285 38.2
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.6e-27 125.9 271 38.4
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-26 124.4 252 39.3
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.3e-26 123.6 266 37.2
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 3.0e-26 123.2 311 36.0
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 3.0e-26 123.2 222 41.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.7e-26 121.7 273 42.9
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.5e-25 120.9 297 37.0
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.5e-25 120.9 273 37.0
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.5e-25 120.9 275 36.7
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.3e-25 119.8 282 36.9
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.3e-25 118.6 310 35.5
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 9.6e-25 118.2 250 39.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.6e-24 117.5 216 44.4
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.6e-24 117.5 281 36.7
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.6e-24 116.3 254 38.6
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 3.6e-24 116.3 334 38.0
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 6.2e-24 115.5 313 37.7
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 6.2e-24 115.5 292 37.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.1e-24 115.2 253 37.9
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.1e-23 114.8 275 35.6
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.8e-23 114.0 259 37.1
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.0e-23 112.8 251 42.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 6.9e-23 112.1 267 39.0
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 9.0e-23 111.7 313 37.4
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 2.0e-22 110.5 325 34.2
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 3.4e-22 109.8 259 39.8
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 4.5e-22 109.4 328 32.6
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.5e-22 109.4 242 37.2
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 5.8e-22 109.0 326 34.4
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 5.8e-22 109.0 261 35.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 5.8e-22 109.0 197 39.6
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.8e-22 109.0 301 35.2
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 5.8e-22 109.0 295 33.2
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 5.8e-22 109.0 296 34.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 7.6e-22 108.6 284 34.5
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 9.9e-22 108.2 316 33.9
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.7e-21 107.5 314 34.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.8e-21 106.3 294 35.0
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.8e-21 106.3 255 36.1
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 4.9e-21 105.9 274 35.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 6.4e-21 105.5 273 38.5
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.1e-20 104.8 277 36.8
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.4e-20 104.4 256 35.9
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.4e-20 103.6 226 38.5
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 7.1e-20 102.1 295 35.6
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-19 101.3 354 32.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.1e-19 100.5 326 34.7
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 2.7e-19 100.1 304 31.9
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 2.7e-19 100.1 304 31.9
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.7e-19 100.1 292 38.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 3.5e-19 99.8 317 35.6
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 5.1e-18 95.9 178 40.4
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 5.1e-18 95.9 293 32.4
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 5.1e-18 95.9 225 35.6
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 8.7e-18 95.1 304 33.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-17 94.4 253 37.9
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.9e-17 94.0 322 33.5
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 2.5e-17 93.6 90 57.8
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 5.6e-17 92.4 281 32.4
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.4e-17 92.0 276 33.3
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 7.4e-17 92.0 154 42.2
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 8.1e-16 88.6 275 33.5
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.4e-15 87.8 271 33.2
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.8e-15 87.4 304 31.9
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.8e-15 87.4 304 31.9
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.8e-15 87.4 261 33.7
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 4.0e-15 86.3 281 31.3
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.6e-14 83.6 305 33.8
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 7.6e-14 82.0 148 40.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 9.9e-14 81.6 219 33.8
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.2e-13 80.5 214 32.2
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.4e-12 77.8 213 32.9
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.4e-12 77.8 213 32.9
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.2e-12 76.6 288 31.2
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 2.1e-11 73.9 288 29.9
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.7e-11 73.6 262 31.3
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.7e-11 73.6 85 51.8
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 3.5e-11 73.2 262 33.6
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 1.0e-10 71.6 215 29.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.8e-10 70.9 205 34.1
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.8e-10 70.9 61 65.6
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.5e-09 67.8 71 56.3
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 8.1e-08 62.0 58 51.7
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.8e-07 60.8 99 47.5
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.4e-07 60.5 57 63.2
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 3.1e-07 60.1 53 54.7
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 4.0e-07 59.7 51 66.7
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 5.3e-07 59.3 71 53.5
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 5.3e-07 59.3 63 57.1
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 6.9e-07 58.9 64 50.0
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 2.0e-06 57.4 69 50.7
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.6e-06 57.0 81 43.2
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 4.5e-06 56.2 55 58.2
Zm00001eb038100 Zea mays HOM05D004504 ORTHO05D005324 4.5e-06 56.2 61 60.7
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.0e-05 55.1 64 51.6


User provided reference genes

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