Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 0.0e+00 1169.1 584 100.0
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.0e-274 947.2 581 81.4
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 5.0e-273 944.1 582 80.2
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.5e-272 942.6 582 80.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 1.9e-272 942.2 544 84.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.3e-272 941.0 584 79.5
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 9.5e-272 939.9 575 81.2
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 6.2e-271 937.2 576 81.1
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.3e-270 935.3 541 84.5
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 2.3e-270 935.3 573 81.5
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 6.8e-270 933.7 541 84.3
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 6.8e-270 933.7 561 82.0
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 2.6e-269 931.8 599 79.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 4.4e-269 931.0 574 80.5
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 7.5e-269 930.2 577 79.9
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 9.8e-269 929.9 580 79.3
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 9.8e-269 929.9 573 80.1
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 2.9e-268 928.3 569 80.1
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 3.7e-268 927.9 572 80.8
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.7e-268 927.9 579 79.8
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 4.9e-268 927.5 579 80.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 6.4e-268 927.2 577 79.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.4e-267 926.0 565 80.2
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.2e-267 924.9 573 78.7
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 4.1e-267 924.5 581 80.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 5.4e-267 924.1 561 80.7
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 7.0e-267 923.7 589 79.1
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 6.0e-266 920.6 587 78.7
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 2.3e-265 918.7 572 79.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.3e-265 918.7 588 76.9
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.3e-265 918.7 569 80.7
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.3e-265 918.7 576 78.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 3.0e-265 918.3 539 82.7
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 3.9e-265 917.9 542 81.9
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 5.1e-265 917.5 572 79.7
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.1e-264 916.4 591 78.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.5e-264 916.0 585 77.6
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.9e-264 915.6 574 78.4
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 2.5e-264 915.2 599 77.6
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.3e-264 914.8 589 79.1
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 3.3e-264 914.8 582 79.2
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 4.3e-264 914.4 587 78.2
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 5.6e-264 914.1 561 81.1
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 9.5e-264 913.3 584 78.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.6e-263 912.5 582 78.9
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 2.1e-263 912.1 580 77.4
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.8e-263 911.8 588 78.7
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 2.8e-263 911.8 582 78.9
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 3.6e-263 911.4 586 78.0
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 3.6e-263 911.4 566 79.9
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.7e-263 911.0 572 79.5
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.7e-263 911.0 589 78.6
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.2e-263 910.6 572 78.5
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.4e-262 909.4 588 76.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.8e-262 909.1 579 79.6
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.1e-262 908.3 529 83.9
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 4.0e-262 907.9 591 77.3
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 4.0e-262 907.9 578 77.2
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.8e-262 907.1 585 78.3
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 8.9e-262 906.7 587 76.8
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.2e-261 906.4 588 76.0
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.5e-261 906.0 582 77.1
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 2.0e-261 905.6 588 76.4
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.0e-261 905.6 586 78.2
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 2.0e-261 905.6 545 81.7
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 7.5e-261 903.7 580 78.6
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 9.9e-261 903.3 585 76.6
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.3e-260 902.9 546 81.9
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 2.2e-260 902.1 557 80.4
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.7e-260 901.4 590 77.5
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 4.9e-260 901.0 578 76.6
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 4.9e-260 901.0 596 76.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 8.3e-260 900.2 580 76.7
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.9e-259 899.0 570 78.2
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.2e-259 898.3 579 78.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 9.2e-259 896.7 578 77.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 9.2e-259 896.7 536 81.0
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.7e-258 895.2 587 76.7
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 3.9e-257 891.3 579 76.9
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 9.9e-253 876.7 579 75.3
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.9e-252 874.4 580 74.8
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 8.4e-252 873.6 582 75.1
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.4e-251 872.8 566 75.8
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.6e-250 869.4 606 73.8
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.5e-250 868.2 572 75.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 5.1e-249 864.4 578 75.6
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.5e-248 862.1 584 73.6
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 9.6e-248 860.1 624 71.8
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.3e-246 854.4 567 75.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.2e-243 845.1 528 79.7
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.2e-242 843.2 535 76.8
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.6e-242 842.8 580 74.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.7e-242 842.0 580 74.5
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.3e-241 839.0 528 79.2
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.1e-239 832.4 608 71.2
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 8.1e-239 830.5 477 84.1
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.0e-237 825.9 643 68.4
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 4.2e-235 818.1 571 73.4
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 5.4e-235 817.8 518 79.2
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 7.1e-235 817.4 550 72.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.1e-233 811.2 588 72.1
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.8e-231 804.7 540 72.6
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.9e-230 800.8 597 71.4
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.1e-224 783.5 595 66.2
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.5e-224 782.3 545 70.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.1e-222 776.9 462 81.4
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.0e-221 772.7 544 71.5
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 2.6e-221 772.3 530 70.6
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 9.3e-219 763.8 474 80.2
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 3.0e-209 732.3 525 71.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.6e-202 708.8 552 66.1
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.2e-189 667.2 537 62.2
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.1e-187 660.6 523 67.7
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.0e-184 649.8 402 80.3
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 2.0e-160 570.1 339 84.1
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 2.9e-159 566.2 550 57.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 6.4e-159 565.1 509 57.4
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-157 560.8 408 72.1
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.5e-157 559.3 354 79.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.3e-156 556.6 544 53.3
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.5e-133 479.6 562 49.1
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.4e-129 467.6 255 89.0
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.4e-92 344.7 232 72.0
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.4e-89 334.7 188 80.9
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.2e-69 268.5 401 44.4
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 4.7e-69 266.5 208 63.9
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.0e-55 222.2 198 58.6
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 8.0e-45 186.0 153 65.4
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.2e-43 182.2 114 78.1
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 4.4e-43 180.3 112 76.8
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 4.3e-38 163.7 101 78.2
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.1e-36 157.5 118 61.9
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 7.3e-30 136.3 312 31.4
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 1.3e-26 125.6 312 33.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 7.1e-25 119.8 73 80.8
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.5e-19 102.1 85 62.4
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 8.4e-18 96.3 58 79.3
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.1e-12 79.3 45 73.3
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-11 75.9 152 38.2
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.2e-11 75.9 126 40.5
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.5e-11 75.5 45 77.8
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 3.4e-11 74.3 107 43.9
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 3.8e-10 70.9 41 73.2
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.6e-08 65.5 52 69.2
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 7.9e-08 63.2 80 48.8
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 1.0e-07 62.8 37 81.1
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 1.1e-06 59.3 55 58.2


User provided reference genes

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