Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.5e-250 868.2 417 100.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.2e-197 691.4 459 77.1
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.9e-196 687.2 462 76.4
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.0e-195 686.8 460 77.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-184 650.2 459 73.2
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-182 643.3 437 75.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.9e-182 642.1 458 73.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.1e-181 640.2 458 73.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.1e-181 640.2 458 73.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.6e-180 636.3 461 71.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.6e-180 636.3 461 71.6
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.7e-180 635.6 460 72.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.0e-178 629.4 458 71.8
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.3e-178 628.6 454 73.1
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-178 627.5 457 71.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 7.5e-178 627.5 458 71.8
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-177 625.2 457 71.6
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-177 625.2 457 71.6
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-177 625.2 457 71.6
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-177 625.2 457 71.6
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.7e-177 625.2 426 75.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-175 619.0 469 70.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.7e-174 616.3 461 70.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.0e-174 614.8 461 70.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 8.5e-174 614.0 459 70.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 8.5e-174 614.0 458 71.2
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.2e-170 603.6 458 69.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.4e-168 594.7 459 68.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.6e-164 582.0 461 68.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-163 580.1 459 67.8
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-163 580.1 459 67.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.3e-161 573.5 461 66.6
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.9e-158 562.4 427 70.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 6.8e-155 551.2 438 67.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.6e-154 549.3 421 70.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-150 536.2 457 63.2
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.9e-149 533.1 315 85.1
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.9e-149 533.1 315 85.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.6e-148 528.9 315 85.1
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.0e-147 527.3 315 84.8
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.0e-147 527.3 315 84.8
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.4e-147 526.9 315 84.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.0e-146 523.1 388 70.4
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.3e-141 505.4 316 81.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-136 490.7 389 67.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-135 486.1 457 59.3
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 3.1e-131 472.6 293 82.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-123 446.4 405 61.5
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.8e-122 441.8 373 65.1
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-118 431.0 403 59.1
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 6.6e-118 428.3 372 63.4
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-108 397.5 280 76.1
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.7e-102 375.2 457 50.8
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 4.5e-98 362.5 242 78.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.8e-97 359.4 404 50.7
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.2e-96 356.3 404 50.5
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 5.9e-90 335.5 315 61.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.7e-87 326.6 273 64.1
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 6.1e-87 325.5 296 63.2
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 5.1e-86 322.4 273 63.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.1e-83 314.7 273 63.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.1e-83 312.8 366 53.3
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.1e-83 312.8 273 62.6
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.1e-83 311.6 273 62.6
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-81 307.4 195 79.0
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-81 307.4 195 79.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.1e-80 304.7 312 57.1
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.5e-80 303.5 290 61.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 7.2e-80 302.0 273 61.2
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.9e-73 280.0 259 61.0
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.3e-67 259.2 163 85.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.7e-60 237.7 755 31.1
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.1e-59 235.0 218 58.7
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 8.5e-57 225.3 143 74.8
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-56 224.6 120 85.8
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.5e-56 224.6 170 73.5
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.9e-56 224.2 136 86.0
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.9e-56 224.2 238 57.1
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 3.6e-55 219.9 129 87.6
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-55 219.9 129 87.6
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.0e-55 218.8 217 54.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.8e-54 215.3 198 62.1
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 5.7e-53 212.6 148 71.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.3e-52 211.5 121 89.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.7e-52 211.1 129 86.0
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.4e-51 207.2 129 83.7
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 3.1e-51 206.8 118 81.4
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.3e-49 200.7 200 55.5
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 6.1e-47 192.6 185 55.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.8e-46 191.0 130 74.6
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.2e-46 189.5 122 82.0
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.0e-41 175.3 119 81.5
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 2.9e-41 173.7 110 78.2
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 4.1e-35 153.3 108 72.2
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-34 151.4 168 56.0
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.0e-33 148.7 170 48.2
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-31 141.0 163 49.7
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.0e-30 136.7 93 79.6
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 6.8e-30 136.0 68 94.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.8e-29 132.9 77 83.1
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.9e-28 130.6 164 45.7
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-28 130.2 85 78.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.9e-27 127.9 94 62.8
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.2e-26 125.2 93 62.4
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-26 123.6 114 56.1
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.6e-25 119.4 114 55.3
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.6e-24 116.3 114 52.6
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.2e-23 115.2 92 57.6
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.6e-23 113.6 88 70.5
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 4.7e-23 113.2 165 42.4
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-22 112.1 70 72.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.0e-22 110.2 47 93.6
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.2e-22 109.8 169 40.2
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 8.3e-20 102.4 47 89.4
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-19 101.7 47 87.2
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-19 101.7 73 68.5
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.2e-19 100.5 62 79.0
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 4.6e-18 96.7 71 70.4
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 5.1e-17 93.2 172 39.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.1e-17 93.2 172 39.0
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-16 91.7 69 69.6
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.9e-16 91.3 64 68.8
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.3e-16 90.5 207 35.3
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.6e-16 89.7 158 39.2
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.3e-16 89.4 80 56.2
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 8.1e-15 85.9 60 75.0
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.8e-14 84.7 51 78.4
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 5.8e-13 79.7 60 71.7
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 3.8e-12 77.0 57 68.4
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 3.8e-12 77.0 36 80.6
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-09 68.2 47 68.1
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 3.9e-09 67.0 29 96.6
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 6.6e-09 66.2 31 96.8
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-08 65.1 47 68.1
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 5.6e-08 63.2 53 60.4
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 7.3e-08 62.8 24 95.8
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 4.7e-07 60.1 48 72.9
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.8e-06 58.2 44 63.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 6.9e-06 56.2 24 79.2
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 6.9e-06 56.2 28 92.9
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-06 56.2 49 57.1


User provided reference genes

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