Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.2e-171 605.5 299 100.0
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 5.6e-111 404.8 290 71.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 7.4e-95 351.3 363 51.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 4.1e-93 345.5 363 50.4
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.0e-88 329.3 359 46.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 3.9e-88 328.9 361 47.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 8.8e-88 327.8 363 47.7
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.5e-87 327.0 371 47.2
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 1.9e-87 326.6 368 45.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 3.3e-87 325.9 363 47.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 5.7e-87 325.1 368 47.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.3e-86 323.9 376 46.3
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.7e-86 323.6 359 48.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.8e-86 322.8 369 48.0
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 4.8e-86 322.0 372 47.0
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 8.2e-86 321.2 364 45.9
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.1e-85 320.9 369 48.0
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.4e-85 320.5 360 46.1
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.8e-85 320.1 364 45.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.4e-85 319.7 364 45.6
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 4.1e-85 318.9 374 46.0
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 6.9e-85 318.2 360 45.8
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 6.9e-85 318.2 369 46.3
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 6.9e-85 318.2 369 45.8
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 9.1e-85 317.8 381 45.4
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 1.5e-84 317.0 369 45.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.6e-84 316.2 368 46.2
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 2.6e-84 316.2 364 45.6
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.4e-84 315.8 370 45.4
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 4.5e-84 315.5 330 50.3
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 5.9e-84 315.1 370 45.4
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 7.2e-82 308.1 361 45.7
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 2.7e-81 306.2 370 44.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.7e-81 306.2 367 46.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.7e-81 306.2 367 45.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 6.1e-81 305.1 360 46.4
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.1e-81 305.1 362 45.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.1e-81 305.1 366 44.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 6.1e-81 305.1 366 44.0
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 6.1e-81 305.1 372 46.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.0e-80 304.3 366 45.1
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.4e-80 303.9 369 44.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.3e-80 303.1 372 43.5
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 3.9e-80 302.4 366 45.4
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.1e-80 302.0 362 44.8
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.1e-80 302.0 362 44.8
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-80 302.0 372 43.5
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.1e-80 302.0 372 43.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 5.1e-80 302.0 370 44.6
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 1.1e-79 300.8 362 44.5
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 2.0e-79 300.1 377 44.6
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.6e-79 299.7 362 44.2
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.3e-79 299.3 363 43.5
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 3.7e-78 295.8 371 43.1
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 6.3e-78 295.0 365 43.8
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 8.2e-78 294.7 363 43.8
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.8e-77 293.5 363 42.4
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 9.1e-77 291.2 367 44.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.5e-76 289.3 361 43.2
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 3.5e-76 289.3 366 44.0
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 8.5e-75 284.6 372 44.9
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-74 284.3 372 42.5
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.1e-74 284.3 372 44.9
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.9e-74 283.5 372 42.5
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 4.2e-74 282.3 368 42.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 4.2e-74 282.3 372 41.9
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 4.2e-74 282.3 357 44.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.5e-74 282.0 373 43.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 7.2e-74 281.6 368 42.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 7.2e-74 281.6 368 42.7
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 7.2e-74 281.6 361 44.3
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 2.7e-73 279.6 368 42.4
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-73 278.9 373 43.2
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.7e-73 278.9 373 42.6
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 6.1e-73 278.5 367 43.6
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.0e-72 277.7 374 43.0
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.4e-72 277.3 277 53.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-72 276.9 374 43.0
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.8e-72 276.9 364 43.7
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.3e-72 276.6 370 41.9
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 2.3e-72 276.6 372 41.1
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.2e-72 275.4 363 44.9
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 6.7e-72 275.0 362 41.7
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 8.8e-72 274.6 372 41.1
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-71 273.9 373 41.3
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.0e-71 273.5 368 43.5
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.6e-71 273.1 371 41.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 3.3e-71 272.7 360 44.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 3.3e-71 272.7 365 42.7
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.4e-71 272.3 364 43.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.7e-70 270.4 364 42.9
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 6.3e-70 268.5 364 43.7
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.1e-69 266.2 370 41.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 4.1e-69 265.8 351 43.9
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.0e-69 265.0 361 44.0
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.2e-68 264.2 367 41.7
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.6e-68 263.8 360 43.1
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.5e-66 256.5 350 41.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.3e-64 250.0 379 40.1
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.5e-63 247.3 366 40.2
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 2.8e-62 243.0 354 39.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.8e-62 243.0 368 37.8
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 8.2e-62 241.5 378 37.8
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-60 236.9 359 37.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 2.7e-60 236.5 352 40.1
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.1e-57 225.3 358 36.3
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 8.0e-57 224.9 456 33.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 9.8e-55 218.0 352 37.5
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.7e-52 209.9 323 39.6
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.3e-51 207.6 323 39.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.5e-50 203.4 376 34.3
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.2e-50 202.6 265 43.0
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 1.2e-49 201.1 232 48.3
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 1.0e-48 198.0 375 34.9
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.0e-48 198.0 366 33.1
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 4.0e-48 196.1 365 33.7
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 1.8e-45 187.2 172 58.7
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.5e-39 167.5 329 34.0
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 2.3e-35 153.7 338 30.2
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.1e-29 134.8 122 50.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 6.0e-28 129.0 122 48.4
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.0e-27 128.3 128 50.8
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 3.9e-27 126.3 202 35.1
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.9e-26 124.0 128 48.4
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.2e-25 119.0 122 47.5
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.3e-24 117.1 169 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 5.8e-23 112.5 198 35.9
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 5.8e-23 112.5 205 32.2
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.6e-20 104.4 182 35.7
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 2.7e-20 103.6 137 36.5
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 8.6e-19 98.6 229 34.1
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.5e-18 95.1 80 47.5
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 4.7e-17 92.8 83 45.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 6.2e-17 92.4 83 45.8
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.8e-16 89.0 80 45.0
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 5.8e-15 85.9 105 49.5
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-13 81.3 88 42.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.4e-13 80.5 88 50.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.2e-13 79.7 95 47.4
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 4.2e-13 79.7 95 47.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.6e-09 67.8 45 66.7
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.6e-09 66.6 60 43.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 8.1e-09 65.5 75 44.0
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 3.1e-08 63.5 58 51.7
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 6.9e-08 62.4 82 37.8


User provided reference genes

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