Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 7.6e-172 607.1 304 100.0
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.7e-131 473.0 301 74.8
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.9e-131 472.2 305 74.4
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.9e-131 472.2 305 75.7
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.9e-130 469.5 305 74.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.1e-129 466.1 300 76.7
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.7e-129 465.7 305 72.5
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 8.0e-129 464.2 301 73.1
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.0e-128 463.8 301 73.8
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.4e-128 463.4 302 74.2
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.3e-128 462.6 302 75.2
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 2.3e-128 462.6 301 74.1
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 2.3e-128 462.6 304 73.7
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 3.9e-128 461.8 301 73.4
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 8.8e-128 460.7 304 73.4
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.0e-127 459.5 305 74.4
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.0e-127 459.5 301 73.8
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-127 459.5 306 74.2
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 3.3e-127 458.8 301 73.1
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 4.4e-127 458.4 302 72.8
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 9.7e-127 457.2 301 74.8
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 9.7e-127 457.2 301 72.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.7e-126 456.4 301 74.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 2.8e-126 455.7 299 73.9
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.7e-126 455.3 301 73.1
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 3.7e-126 455.3 301 73.4
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.7e-126 455.3 297 72.7
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 4.8e-126 454.9 306 72.5
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 6.3e-126 454.5 305 71.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 6.3e-126 454.5 303 70.6
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.1e-125 453.8 304 71.7
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.1e-125 453.8 303 72.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.1e-125 453.8 305 72.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.8e-125 453.0 306 72.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 1.8e-125 453.0 305 70.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 4.1e-125 451.8 301 71.4
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 4.1e-125 451.8 305 72.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 5.3e-125 451.4 305 70.8
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 5.3e-125 451.4 306 72.2
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 7.0e-125 451.1 300 71.0
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 9.1e-125 450.7 300 70.7
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.2e-124 450.3 299 69.9
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.6e-124 449.9 305 71.5
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.6e-124 449.9 302 72.5
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.6e-124 449.9 305 70.5
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.0e-124 449.5 306 71.6
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.6e-124 449.1 301 71.1
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 3.5e-124 448.7 300 70.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 5.9e-124 448.0 303 69.6
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 5.9e-124 448.0 301 71.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 7.7e-124 447.6 304 69.4
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.3e-123 446.8 301 70.4
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.9e-123 445.7 306 69.6
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.9e-123 445.7 299 70.6
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 3.8e-123 445.3 300 70.0
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.5e-122 443.4 306 70.9
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.2e-122 441.8 300 69.7
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 5.5e-122 441.4 301 71.4
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 7.2e-122 441.0 305 68.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 7.2e-122 441.0 301 70.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 7.2e-122 441.0 301 70.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 7.2e-122 441.0 305 70.5
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.2e-121 440.3 305 69.5
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 2.1e-121 439.5 305 69.5
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.1e-121 439.5 300 72.7
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.7e-121 439.1 305 70.2
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 4.7e-121 438.3 302 68.5
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 4.7e-121 438.3 304 67.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 4.7e-121 438.3 306 69.3
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 4.7e-121 438.3 306 69.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.0e-120 437.2 304 68.4
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 1.0e-120 437.2 301 71.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.3e-120 436.0 304 67.8
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 4.0e-120 435.3 305 69.2
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.0e-120 435.3 300 71.7
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 5.2e-120 434.9 305 67.5
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 5.2e-120 434.9 305 67.5
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 6.8e-120 434.5 301 69.4
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 8.8e-120 434.1 305 67.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 2.0e-119 433.0 337 65.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.0e-119 433.0 305 67.5
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 2.6e-119 432.6 305 67.2
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 4.4e-119 431.8 302 67.5
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 4.4e-119 431.8 302 68.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.4e-119 431.8 305 67.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.4e-119 431.8 310 67.1
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 9.7e-119 430.6 305 67.2
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.3e-118 430.3 302 67.2
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.7e-118 429.9 303 68.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.7e-118 429.9 298 68.5
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 2.8e-118 429.1 304 67.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 4.8e-118 428.3 304 66.1
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 7.0e-117 424.5 379 58.0
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 9.1e-117 424.1 310 69.7
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.2e-116 423.7 373 59.2
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.7e-116 422.5 304 66.4
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.2e-115 419.5 303 66.0
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.0e-112 410.6 310 64.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.5e-111 406.8 327 61.5
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.1e-109 399.1 307 63.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.6e-107 391.0 301 64.1
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.2e-105 387.1 307 63.5
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.3e-102 377.1 269 69.9
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.8e-102 375.9 305 63.0
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 5.4e-101 371.7 265 66.4
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 3.6e-97 359.0 258 67.4
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.8e-96 354.8 266 64.7
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 9.2e-93 344.4 304 57.6
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.1e-90 337.4 302 54.3
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.6e-87 326.2 238 65.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 5.8e-87 325.1 291 55.7
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 2.2e-86 323.2 302 52.0
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 5.1e-83 312.0 216 70.4
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 7.3e-82 308.1 201 74.6
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.6e-81 307.0 303 54.5
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 4.9e-78 295.4 265 57.4
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 9.6e-74 281.2 206 64.1
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 8.4e-70 268.1 177 70.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 8.4e-70 268.1 177 71.2
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.8e-65 252.3 237 53.2
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.9e-59 232.6 177 65.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.4e-56 224.2 181 66.3
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 4.6e-52 209.1 142 71.1
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.1e-51 205.7 130 78.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 4.3e-50 202.6 186 53.8
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.7e-46 190.7 126 69.8
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 3.2e-45 186.4 126 70.6
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 9.3e-45 184.9 134 66.4
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-43 181.4 170 51.2
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.6e-42 174.9 156 60.9
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 6.9e-40 168.7 107 74.8
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.1e-34 151.4 151 57.6
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-33 147.9 105 69.5
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-33 147.9 105 66.7
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 3.7e-33 146.4 101 69.3
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 8.8e-19 98.6 78 61.5
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.5e-15 86.7 52 71.2


User provided reference genes

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