Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 3.2e-175 618.2 291 100.0
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 3.0e-101 372.5 346 52.9
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 9.4e-95 350.9 348 48.0
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 2.7e-94 349.4 345 48.7
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 8.0e-94 347.8 346 49.4
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 1.4e-93 347.1 353 48.2
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.0e-93 345.9 322 51.9
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 8.8e-93 344.4 353 48.7
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 2.6e-92 342.8 342 49.1
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 3.7e-91 339.0 343 47.8
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 6.3e-91 338.2 341 49.9
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 8.2e-91 337.8 343 48.1
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 1.1e-90 337.4 342 46.8
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 1.8e-90 336.7 343 49.0
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 2.4e-90 336.3 341 48.1
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 4.1e-90 335.5 339 47.8
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 4.1e-90 335.5 337 49.9
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 5.3e-90 335.1 340 49.1
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 9.1e-90 334.3 347 47.0
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 9.1e-90 334.3 345 47.5
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 2.6e-89 332.8 337 49.0
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 2.6e-89 332.8 346 47.4
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 3.5e-89 332.4 350 48.3
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 5.9e-89 331.6 344 47.1
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 7.7e-89 331.3 345 46.7
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.7e-88 330.1 343 49.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.7e-88 330.1 317 51.1
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 2.9e-88 329.3 342 47.1
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 2.9e-88 329.3 339 46.6
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 8.5e-88 327.8 344 48.0
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.1e-87 327.4 345 46.4
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 1.1e-87 327.4 340 47.6
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 1.5e-87 327.0 346 47.7
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 1.5e-87 327.0 340 47.9
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 1.9e-87 326.6 343 48.4
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.9e-87 326.6 343 48.4
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 7.2e-87 324.7 342 48.0
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 1.2e-86 323.9 345 47.0
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.1e-86 323.2 343 48.1
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 2.7e-86 322.8 345 47.2
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 4.7e-86 322.0 347 46.1
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 6.1e-86 321.6 348 48.0
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 8.0e-86 321.2 342 47.4
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 1.8e-85 320.1 345 45.5
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.0e-85 319.3 348 48.0
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 4.0e-85 318.9 348 48.0
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 6.7e-85 318.2 349 46.1
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 2.0e-84 316.6 344 45.1
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 5.7e-84 315.1 341 47.5
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 2.2e-83 313.2 393 42.2
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 2.8e-83 312.8 342 47.7
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.7e-83 312.4 341 45.5
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.8e-83 312.0 340 47.4
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.1e-82 310.8 344 44.5
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.1e-82 310.8 317 47.3
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.4e-82 310.5 341 45.2
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 3.1e-82 309.3 335 48.7
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 5.3e-82 308.5 340 48.2
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.2e-81 307.4 340 44.7
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 1.6e-81 307.0 340 47.1
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.6e-81 307.0 335 48.1
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 7.7e-81 304.7 341 45.5
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 1.3e-80 303.9 342 45.9
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 2.9e-80 302.8 339 47.2
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 5.0e-80 302.0 348 44.5
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 8.5e-80 301.2 339 45.1
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 8.5e-80 301.2 340 47.9
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 1.1e-79 300.8 340 47.6
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 1.1e-79 300.8 341 46.0
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 1.1e-79 300.8 338 46.2
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.5e-79 300.4 348 44.0
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.9e-79 300.1 341 46.3
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 9.4e-79 297.7 344 43.9
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 3.6e-78 295.8 345 45.5
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 3.6e-78 295.8 313 47.9
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 8.0e-78 294.7 346 44.8
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 4.0e-77 292.4 347 47.0
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.8e-77 291.6 319 47.3
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.2e-76 290.8 339 44.5
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 2.0e-76 290.0 338 45.3
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 2.0e-76 290.0 344 46.2
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 4.4e-76 288.9 341 44.3
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 2.2e-75 286.6 340 45.0
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 2.2e-75 286.6 340 44.1
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 3.7e-75 285.8 340 45.3
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 4.8e-75 285.4 340 45.9
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 8.3e-75 284.6 339 44.0
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 8.3e-75 284.6 337 45.4
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 8.3e-75 284.6 337 45.4
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 8.3e-75 284.6 337 45.4
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 1.4e-74 283.9 325 44.6
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.0e-73 280.0 343 44.0
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 5.9e-73 278.5 330 46.1
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 7.7e-73 278.1 340 44.1
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 1.3e-72 277.3 337 45.4
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 3.8e-72 275.8 338 42.6
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 6.6e-72 275.0 340 42.9
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 2.3e-69 266.5 387 38.8
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 1.5e-68 263.8 325 42.8
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 9.2e-66 254.6 348 38.2
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 8.3e-59 231.5 338 39.6
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 9.2e-58 228.0 204 50.5
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.2e-57 227.6 200 52.5
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 2.7e-57 226.5 200 52.5
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 6.6e-56 221.9 218 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 1.5e-55 220.7 377 35.5
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 3.3e-55 219.5 180 56.1
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.2e-54 217.6 205 51.2
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.2e-54 217.6 205 51.2
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 2.1e-54 216.9 205 49.3
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 3.6e-54 216.1 205 51.2
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 4.7e-54 215.7 207 51.2
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 8.0e-54 214.9 272 41.9
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.2e-52 211.1 215 44.7
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 3.4e-52 209.5 204 47.1
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.2e-49 201.1 204 47.1
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.8e-45 187.2 209 45.0
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 2.9e-43 179.9 308 33.1
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 9.6e-39 164.9 509 26.3
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.5e-36 157.5 170 47.1
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 6.4e-35 152.1 170 45.9
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 1.9e-34 150.6 159 45.9
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 4.6e-33 146.0 166 44.6
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.6e-30 137.5 113 56.6
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.0e-28 130.6 173 39.3
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 5.4e-26 122.5 205 37.1
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 2.7e-25 120.2 172 33.7
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 2.3e-24 117.1 100 54.0
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 1.5e-20 104.4 287 29.3
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 2.9e-19 100.1 81 58.0
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 7.1e-18 95.5 85 54.1
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 3.0e-16 90.1 70 52.9
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 4.5e-12 76.3 140 32.9
PRCOL_00001377 Prasinoderma coloniale HOM05D005549 ORTHO05D006771 5.8e-12 75.9 175 30.3
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 3.2e-10 70.1 96 39.6
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 7.1e-10 68.9 97 38.1
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 9.6e-07 58.5 146 30.1


User provided reference genes

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