Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3172 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 0.0e+00 2291.5 1276 100.0
CDE09G1221 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 0.0e+00 1085.1 701 86.7
CDE09G0990 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 2.9e-204 716.8 440 90.2
MBI11_g22624_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D007037 4.4e-181 639.8 1386 36.0
TAR371G0312 Trochodendron aralioides HOM05D002970 ORTHO05D007037 2.5e-176 624.0 1368 35.2
Dinv14772 Davidia involucrata HOM05D002970 ORTHO05D007037 8.4e-172 609.0 1253 35.7
Dinv11020 Davidia involucrata HOM05D002970 ORTHO05D007037 5.1e-169 599.7 1253 36.0
Actinidia08107 Actinidia chinensis HOM05D002970 ORTHO05D007037 1.5e-149 535.0 1269 33.3
Ciclev10030479m.g Citrus clementina HOM05D002970 ORTHO05D007037 6.7e-129 466.5 1223 30.8
Atru.chr11.2207 Acer truncatum HOM05D002970 ORTHO05D007037 9.1e-126 456.1 1146 31.8
CiPaw.05G175500 Carya illinoinensis HOM05D002970 ORTHO05D007037 2.6e-125 454.5 1276 31.5
PSO063G0226 Papaver somniferum HOM05D002970 ORTHO05D007037 2.6e-125 454.5 1344 30.8
PSO013G0304 Papaver somniferum HOM05D002970 ORTHO05D007037 2.7e-122 444.5 1334 30.4
Prupe.1G238600 Prunus persica HOM05D002970 ORTHO05D007037 2.3e-121 441.4 1099 32.3
MD13G1107800 Malus domestica HOM05D002970 ORTHO05D007037 2.2e-119 434.9 1158 30.8
PGR119G0825 Punica granatum HOM05D002970 ORTHO05D007037 1.4e-118 432.2 1118 32.3
Sed0018065 Sechium edule HOM05D002970 ORTHO05D007037 5.5e-115 420.2 957 33.3
Manes.12G018200 Manihot esculenta HOM05D002970 ORTHO05D007037 2.1e-114 418.3 1294 29.3
Nitab4.5_0000041g0280 Nicotiana tabacum HOM05D002970 ORTHO05D007037 2.7e-114 417.9 1238 31.4
Lj3A1063T61 Lonicera japonica HOM05D002970 ORTHO05D007037 1.1e-110 406.0 1237 30.6
Glyma.18G011200 Glycine max HOM05D002970 ORTHO05D007037 1.8e-110 405.2 1227 30.8
Aqoxy5G03607 Aquilegia oxysepala HOM05D002970 ORTHO05D007037 2.4e-110 404.8 1259 30.3
PSO063G6630 Papaver somniferum HOM05D002970 ORTHO05D007037 1.7e-108 398.7 1046 31.7
CANSAT01G0097 Cannabis sativa HOM05D002970 ORTHO05D007037 6.5e-108 396.7 1155 32.8
Haze_12310 Corylus avellana HOM05D002970 ORTHO05D007037 5.5e-107 393.7 1193 30.1
Eucgr.H04698 Eucalyptus grandis HOM05D002970 ORTHO05D007037 6.1e-106 390.2 895 34.1
Potri.010G052600 Populus trichocarpa HOM05D002970 ORTHO05D007037 3.0e-105 387.9 1263 28.9
Gorai.005G173600 Gossypium raimondii HOM05D002970 ORTHO05D007037 8.8e-105 386.3 1146 29.5
Glyma.11G246000 Glycine max HOM05D002970 ORTHO05D007037 1.2e-104 386.0 1214 29.9
MD16G1107700 Malus domestica HOM05D002970 ORTHO05D007037 2.6e-104 384.8 869 32.6
GSVIVG01010295001 Vitis vinifera HOM05D002970 ORTHO05D007037 2.6e-104 384.8 1221 30.5
Sed0022070 Sechium edule HOM05D002970 ORTHO05D007037 4.4e-104 384.0 1027 32.8
AUR62005543 Chenopodium quinoa HOM05D002970 ORTHO05D007037 2.2e-103 381.7 1200 30.2
Ca_25118_v3 Cicer arietinum L. HOM05D002970 ORTHO05D007037 4.9e-103 380.6 967 32.8
CSS0037497 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D007037 6.3e-103 380.2 1339 29.1
Gohir.D01G153501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 4.1e-102 377.5 1034 30.6
Sabra10G0017800 Salix brachista HOM05D002970 ORTHO05D007037 5.4e-102 377.1 950 32.5
Cc11_g16290 Coffea canephora HOM05D002970 ORTHO05D007037 9.2e-102 376.3 1246 29.6
CAN.G49.7 Capsicum annuum HOM05D002970 ORTHO05D007037 2.7e-101 374.8 1227 30.3
CsaV3_5G030650 Cucumis sativus L. HOM05D002970 ORTHO05D007037 3.5e-101 374.4 1178 28.8
AUR62024190 Chenopodium quinoa HOM05D002970 ORTHO05D007037 4.5e-101 374.0 1273 29.7
Lalb_Chr23g0277811 Lupinus albus HOM05D002970 ORTHO05D007037 4.5e-101 374.0 1195 30.8
Nitab4.5_0007823g0020 Nicotiana tabacum HOM05D002970 ORTHO05D007037 8.6e-100 369.8 1205 29.8
Rhsim12G0037200 Rhododendron simsii HOM05D002970 ORTHO05D007037 7.3e-99 366.7 1260 30.2
Sopen05g009230 Solanum pennellii HOM05D002970 ORTHO05D007037 3.6e-98 364.4 1268 29.3
Thecc.02G269400 Theobroma cacao HOM05D002970 ORTHO05D007037 4.7e-98 364.0 902 32.2
Solyc05g014200.3 Solanum lycopersicum HOM05D002970 ORTHO05D007037 1.0e-97 362.8 1269 29.1
MELO3C011904.2 Cucumis melo HOM05D002970 ORTHO05D007037 1.4e-97 362.5 1232 29.1
Gohir.D02G154501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 7.5e-96 356.7 1139 28.8
Phvul.001G257700 Phaseolus vulgaris HOM05D002970 ORTHO05D007037 2.2e-95 355.1 1366 28.0
ClCG05G026190 Citrullus lanatus HOM05D002970 ORTHO05D007037 3.7e-95 354.4 1214 28.1
arahy.Tifrunner.gnm1.ann1.CS70SB Arachis hypogaea HOM05D002970 ORTHO05D007037 1.1e-94 352.8 1069 31.1
Oeu049169.1 Olea europaea HOM05D002970 ORTHO05D007037 5.9e-93 347.1 1161 29.6
Duzib251G0656 Durio zibethinus HOM05D002970 ORTHO05D007037 3.9e-92 344.4 750 34.1
Lj6g0025430 Lotus japonicus HOM05D002970 ORTHO05D007037 1.4e-89 335.9 934 32.0
Sc11g0000790 Simmondsia chinensis HOM05D002970 ORTHO05D007037 2.0e-88 332.0 990 30.4
EL10Ac6g15185 Beta vulgaris HOM05D002970 ORTHO05D007037 5.8e-88 330.5 1189 29.1
arahy.Tifrunner.gnm1.ann1.9A7Q93 Arachis hypogaea HOM05D002970 ORTHO05D007037 2.2e-87 328.6 1206 28.4
Actinidia30693 Actinidia chinensis HOM05D002970 ORTHO05D007037 2.4e-86 325.1 848 31.5
Migut.K00673 Erythranthe guttata HOM05D002970 ORTHO05D007037 1.7e-84 318.9 1266 26.9
Psat5g093520 Pisum sativum HOM05D002970 ORTHO05D007037 1.7e-84 318.9 1033 29.7
VMungo1383G0211 Vigna mungo HOM05D002970 ORTHO05D007037 1.5e-83 315.8 1226 28.8
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 2.3e-81 308.5 1244 26.4
TWI36G0141 Tripterygium wilfordii HOM05D002970 ORTHO05D007037 4.4e-80 304.3 1375 25.6
Gorai.002G190100 Gossypium raimondii HOM05D002970 ORTHO05D007037 1.3e-79 302.8 1034 29.1
Medtr3g086150 Medicago truncatula HOM05D002970 ORTHO05D007037 1.7e-79 302.4 1257 26.7
Gohir.A03G130800 Gossypium hirsutum HOM05D002970 ORTHO05D007037 1.4e-78 299.3 898 29.4
Lsat_1_v5_gn_8_150420 Lactuca sativa HOM05D002970 ORTHO05D007037 1.4e-78 299.3 1080 30.2
HPP92_009917 Vanilla planifolia HOM05D002970 ORTHO05D007037 1.9e-78 298.9 1305 25.2
QL03p055853 Quercus lobata HOM05D002970 ORTHO05D007037 1.1e-75 289.7 1860 22.8
Peaxi162Scf00128g00725 Petunia axillaris HOM05D002970 ORTHO05D007037 2.0e-72 278.9 1078 28.7
ECA233G2191 Erigeron canadensis HOM05D002970 ORTHO05D007037 1.7e-71 275.8 1105 28.6
Thhalv10006539m.g Eutrema salsugineum HOM05D002970 ORTHO05D007037 1.7e-71 275.8 904 27.7
vmacro01100 Vaccinium macrocarpon HOM05D002970 ORTHO05D007037 4.9e-71 274.2 555 37.1
TPR.G14240 Trifolium pratense HOM05D002970 ORTHO05D007037 1.9e-70 272.3 785 31.8
Sp1g23340 Schrenkiella parvula HOM05D002970 ORTHO05D007037 7.1e-70 270.4 931 26.5
Duzib268G0346 Durio zibethinus HOM05D002970 ORTHO05D007037 1.0e-68 266.5 647 32.5
FAN22G0223 Fragaria x ananassa HOM05D002970 ORTHO05D007037 3.9e-68 264.6 992 26.9
CARHR026670 Cardamine hirsuta HOM05D002970 ORTHO05D007037 5.1e-68 264.2 922 27.1
SGA_v2.0_scaffold100G29587 Striga asiatica HOM05D002970 ORTHO05D007037 5.6e-67 260.8 1033 26.2
Duzib268G0312 Durio zibethinus HOM05D002970 ORTHO05D007037 2.1e-66 258.8 654 31.8
AT1G24460 Arabidopsis thaliana HOM05D002970 ORTHO05D007037 4.7e-66 257.7 840 26.9
C05p25820 Brassica napus HOM05D002970 ORTHO05D007037 1.5e-64 252.7 954 26.2
EL10As2g23227 Beta vulgaris HOM05D002970 ORTHO05D007037 3.4e-64 251.5 1207 26.2
ECA246G5228 Erigeron canadensis HOM05D002970 ORTHO05D001380 9.9e-64 250.0 1095 25.8
MSTRG.540 Avicennia marina HOM05D002970 ORTHO05D007037 1.7e-63 249.2 1271 25.3
BolC5t31302H Brassica oleracea HOM05D002970 ORTHO05D007037 2.2e-63 248.8 938 26.0
BcaB03g12058 Brassica carinata HOM05D002970 ORTHO05D007037 1.1e-62 246.5 909 27.2
A09p38780 Brassica napus HOM05D002970 ORTHO05D007037 4.2e-62 244.6 903 26.0
BraA09t39386Z Brassica rapa HOM05D002970 ORTHO05D007037 1.2e-61 243.0 912 25.9
BcaC05g26716 Brassica carinata HOM05D002970 ORTHO05D007037 6.6e-60 237.3 927 26.3
DCAR_007026 Daucus carota HOM05D002970 ORTHO05D007037 4.8e-58 231.1 1568 22.5
A08p26560 Brassica napus HOM05D002970 ORTHO05D007037 6.2e-58 230.7 794 27.7
BcaC05g26524 Brassica carinata HOM05D002970 ORTHO05D007037 1.8e-57 229.2 943 25.2
C03p73460 Brassica napus HOM05D002970 ORTHO05D007037 9.0e-57 226.9 793 28.1
HanXRQChr12g0372101 Helianthus annuus HOM05D002970 ORTHO05D007037 5.8e-56 224.2 1143 26.1
Cpa.g.sc86.7 Carica papaya HOM05D002970 ORTHO05D007037 1.7e-55 222.6 761 27.2
Carub.0001s2565 Capsella rubella HOM05D002970 ORTHO05D007037 4.2e-54 218.0 960 25.2
Gohir.A01G156751 Gossypium hirsutum HOM05D002970 ORTHO05D007037 5.4e-54 217.6 611 31.6
BraA08t34608Z Brassica rapa HOM05D002970 ORTHO05D007037 2.7e-53 215.3 755 27.8
AL1G40480 Arabidopsis lyrata HOM05D002970 ORTHO05D007037 7.9e-53 213.8 1213 25.0
THA.LOC104825534 Tarenaya hassleriana HOM05D002970 ORTHO05D007037 7.9e-53 213.8 918 25.5
FvH4_4g24950 Fragaria vesca HOM05D002970 ORTHO05D007037 7.4e-51 207.2 1028 26.3
FAN12G3366 Fragaria x ananassa HOM05D002970 ORTHO05D007037 7.4e-51 207.2 1028 26.3
Ah.03g133670 Amaranthus hybridus HOM05D002970 ORTHO05D007037 4.8e-50 204.5 978 25.8
BolC3t19641H Brassica oleracea HOM05D002970 ORTHO05D007037 8.1e-50 203.8 796 27.0
Zm00001eb246290 Zea mays HOM05D002970 ORTHO05D007037 9.9e-48 196.8 1107 24.2
PSO478G2615 Papaver somniferum HOM05D002970 ORTHO05D007037 3.8e-47 194.9 1065 24.0
SEGI_07626 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 3.2e-46 191.8 1034 23.8
SEGI_37710 Sequoiadendron giganteum HOM05D005366 ORTHO05D006323 3.2e-46 191.8 1034 23.8
DCAR_031175 Daucus carota HOM05D002970 ORTHO05D007037 4.2e-46 191.4 1140 24.6
Aa31LG4G12160 Aethionema arabicum HOM05D002970 ORTHO05D007037 9.3e-46 190.3 1136 23.9
RcHm_v2.0_Chr4g0431991 Rosa chinensis HOM05D002970 ORTHO05D007037 2.1e-45 189.1 725 27.4
PSO170G4478 Papaver somniferum HOM05D002970 ORTHO05D007037 9.6e-43 180.3 516 32.2
FAN07G0847 Fragaria x ananassa HOM05D002970 ORTHO05D007037 8.2e-42 177.2 1085 23.4
unitig_749.g13283 Utricularia gibba HOM05D002970 ORTHO05D007037 1.5e-40 172.9 517 28.0
BcaC05g26719 Brassica carinata HOM05D002970 ORTHO05D007037 2.0e-40 172.6 963 24.4
unitig_35.g30193 Utricularia gibba HOM05D002970 ORTHO05D007037 2.5e-30 139.0 562 27.0
Lsat_1_v5_gn_3_29221 Lactuca sativa HOM05D002970 ORTHO05D007037 1.0e-28 133.7 1155 23.6
unitig_35.g30192 Utricularia gibba HOM05D002970 ORTHO05D007037 4.5e-24 118.2 248 31.9
Actinidia30694 Actinidia chinensis HOM05D002970 ORTHO05D007037 6.1e-21 107.8 215 38.1
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 1.7e-18 99.8 1249 21.1
PSO170G3496 Papaver somniferum HOM05D002970 ORTHO05D007037 1.8e-17 96.3 231 32.5
vmacro00028 Vaccinium macrocarpon HOM05D005366 ORTHO05D006323 1.0e-15 90.5 737 21.3
Gohir.A01G156801 Gossypium hirsutum HOM05D002970 ORTHO05D007037 2.2e-15 89.4 345 24.9
CsaV3_3G047150 Cucumis sativus L. HOM05D005366 ORTHO05D006323 1.1e-14 87.0 952 22.9
MELO3C003621.2 Cucumis melo HOM05D005366 ORTHO05D006323 1.9e-14 86.3 951 22.4
unitig_749.g13284 Utricularia gibba HOM05D002970 ORTHO05D007037 1.2e-13 83.6 609 23.5
Os02g0598300 Oryza sativa ssp. japonica HOM05D002970 ORTHO05D007037 2.7e-13 82.4 238 26.1
Hma1.2p1_0272F.1_g109220 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 6.1e-13 81.3 758 21.8
SGA_v2.0_scaffold193G40671 Striga asiatica HOM05D005366 ORTHO05D006323 1.4e-12 80.1 617 24.0
Solyc08g006420.3 Solanum lycopersicum HOM05D005366 ORTHO05D006323 1.5e-11 76.6 505 23.4
Haze_21759 Corylus avellana HOM05D005366 ORTHO05D006323 3.3e-11 75.5 282 26.2
Nitab4.5_0008193g0020 Nicotiana tabacum HOM05D005366 ORTHO05D006323 3.7e-10 72.0 590 23.9
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 4.8e-10 71.6 668 21.1
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 4.8e-10 71.6 215 28.4
QL12p025430 Quercus lobata HOM05D005366 ORTHO05D006323 4.8e-10 71.6 298 25.2
Gohir.A05G063400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 6.3e-10 71.2 215 28.4
Actinidia06431 Actinidia chinensis HOM05D005366 ORTHO05D006323 8.2e-10 70.9 171 29.8
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.2e-10 70.9 181 31.5
FAN07G0776 Fragaria x ananassa HOM05D002970 ORTHO05D007037 8.2e-10 70.9 135 36.3
Gohir.A07G002100 Gossypium hirsutum HOM05D005366 ORTHO05D006323 8.2e-10 70.9 183 31.7
Gohir.D07G002400 Gossypium hirsutum HOM05D005366 ORTHO05D006323 8.2e-10 70.9 183 31.7
Gorai.001G002300 Gossypium raimondii HOM05D005366 ORTHO05D006323 8.2e-10 70.9 183 31.7
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 8.2e-10 70.9 425 22.6
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 1.1e-09 70.5 536 23.5
FvH4_2g36740 Fragaria vesca HOM05D005366 ORTHO05D006323 1.8e-09 69.7 299 24.7
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 3.1e-09 68.9 645 21.7
Migut.A00429 Erythranthe guttata HOM05D005366 ORTHO05D006323 4.1e-09 68.6 173 31.2
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 5.3e-09 68.2 221 27.6
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 1.2e-08 67.0 476 24.4
TAR625G0224 Trochodendron aralioides HOM05D005366 ORTHO05D006323 2.6e-08 65.9 192 29.7
Ciclev10007223m.g Citrus clementina HOM05D005366 ORTHO05D006323 4.5e-08 65.1 182 28.6
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 7.7e-08 64.3 326 25.5
FAN15G0510 Fragaria x ananassa HOM05D005366 ORTHO05D006323 1.0e-07 63.9 478 23.2
Lj7C748G6 Lonicera japonica HOM05D005366 ORTHO05D006323 1.0e-07 63.9 821 21.0
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 2.2e-07 62.8 731 20.9
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 5.0e-07 61.6 460 24.3
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 5.0e-07 61.6 586 23.7
Phvul.001G060300 Phaseolus vulgaris HOM05D005366 ORTHO05D006323 1.5e-06 60.1 536 22.8
Cpa.g.sc23.30 Carica papaya HOM05D005366 ORTHO05D006323 1.9e-06 59.7 201 27.9
Duzib168G0091 Durio zibethinus HOM05D005366 ORTHO05D006323 1.9e-06 59.7 464 24.8
Duzib268G1442 Durio zibethinus HOM05D002970 ORTHO05D007037 1.9e-06 59.7 235 27.7
FAN20G2855 Fragaria x ananassa HOM05D005366 ORTHO05D006323 2.5e-06 59.3 424 23.1
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 3.2e-06 58.9 674 21.8
FAN27G2425 Fragaria x ananassa HOM05D005366 ORTHO05D006323 5.5e-06 58.2 479 22.8
MD08G1126800 Malus domestica HOM05D005366 ORTHO05D006323 7.2e-06 57.8 688 21.7


User provided reference genes

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