Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 4.6e-112 407.9 208 100.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 90.4
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.3e-101 373.2 208 89.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.7e-101 372.9 206 91.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 89.9
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 89.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 89.9
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 4.8e-101 371.3 207 89.4
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 4.8e-101 371.3 207 89.9
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.4
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.4
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 88.5
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 88.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 89.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.0
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 88.5
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 88.8
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 88.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.4e-100 369.0 206 89.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.5
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 87.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 88.5
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 4.1e-100 368.2 207 87.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 5.3e-100 367.9 206 88.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 88.5
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 88.0
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 6.9e-100 367.5 208 88.0
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 87.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.5e-99 366.3 206 89.3
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.0
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 87.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.5
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 87.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.6e-99 365.5 206 88.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.6e-99 365.5 208 88.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.6e-99 365.5 208 87.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 87.5
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 88.0
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.9e-99 364.4 210 88.1
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 86.5
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 88.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.9e-99 364.4 213 86.4
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.0e-98 363.6 206 88.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 87.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 87.0
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 86.5
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 86.5
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.9e-98 362.1 206 86.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 86.1
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 88.0
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.5e-98 360.9 208 86.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 84.1
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 87.0
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.9e-97 359.4 208 83.7
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.0
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 85.6
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 87.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.2e-97 358.6 207 86.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 86.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.2e-97 358.2 209 87.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 86.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 86.5
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.1e-96 355.9 209 86.6
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.1e-96 355.9 203 87.7
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.7e-96 355.5 209 86.1
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.7e-96 355.5 209 86.1
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 3.6e-96 355.1 218 83.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 4.7e-96 354.8 206 85.0
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 86.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.4e-95 353.2 207 85.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 85.6
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 85.6
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 84.6
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 6.7e-95 350.9 208 85.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 6.7e-95 350.9 208 85.1
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 6.7e-95 350.9 205 86.8
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.1e-94 350.1 205 86.8
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.0e-94 349.4 207 85.5
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 2.6e-94 349.0 207 87.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 9.7e-94 347.1 208 84.6
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.3e-93 346.7 208 84.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.7e-93 346.3 208 84.1
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 85.1
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.4e-92 343.2 208 83.2
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 5.3e-92 341.3 196 87.8
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-91 340.1 207 83.6
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-91 340.1 207 83.6
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-91 339.3 207 83.6
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.7e-90 336.3 208 82.2
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.9e-89 332.8 207 81.6
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.6e-88 329.7 208 81.2
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.7e-88 328.9 208 76.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 8.8e-87 323.9 208 80.3
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.8e-87 323.9 190 84.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.7e-86 321.2 206 80.1
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 7.4e-86 320.9 178 88.2
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.4e-84 315.8 179 86.6
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.2e-83 313.5 178 86.0
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.8e-82 308.5 210 78.1
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 8.5e-82 307.4 178 84.8
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.5e-81 305.8 177 84.7
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.5e-81 305.8 179 83.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.0e-79 298.9 205 75.1
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.0e-79 298.5 208 76.4
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.8e-74 282.0 207 72.0
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 3.8e-74 282.0 167 82.6
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.4e-71 273.5 156 86.5
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 3.0e-71 272.3 156 85.9
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 6.3e-69 264.6 203 63.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 8.3e-69 264.2 202 63.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.7e-66 256.5 232 62.1
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.1e-65 253.8 197 63.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.5e-65 252.7 200 60.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.8e-63 244.6 206 64.6
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 9.2e-60 234.2 206 54.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 4.3e-57 225.3 162 72.8
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.8e-56 222.6 133 87.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.7e-53 212.2 120 85.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 54.6
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.7e-51 206.1 207 50.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 3.3e-49 199.1 198 48.0
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.7e-48 195.3 151 69.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 6.2e-48 194.9 209 55.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.3e-47 193.0 196 46.9
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 4.0e-47 192.2 167 62.3
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.3e-41 172.6 231 42.4
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.8e-39 166.8 156 61.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-36 157.1 98 78.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-36 156.8 208 48.1
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 5.6e-33 145.2 187 40.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 8.9e-31 137.9 206 43.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.4e-30 136.0 74 90.5
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.4e-29 131.7 83 79.5
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 7.1e-28 128.3 96 74.0
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-26 124.0 95 72.6
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 7.3e-25 118.2 92 66.3
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.4e-23 114.0 135 53.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.0e-22 110.2 60 85.0
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 5.4e-20 102.1 60 83.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-19 100.9 82 62.2
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 4.6e-19 99.0 73 71.2
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 3.2e-12 76.3 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 6.7e-10 68.6 62 64.5
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.1e-07 61.2 39 71.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.5e-06 57.4 38 68.4
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.6e-06 56.6 58 62.1


User provided reference genes

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