Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.6e-275 951.4 480 100.0
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 6.8e-159 564.7 519 58.0
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.8e-158 561.6 521 57.6
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.8e-158 561.6 501 59.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-157 560.5 501 59.3
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 8.3e-157 557.8 504 58.1
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 4.1e-156 555.4 508 56.3
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.1e-156 554.7 502 57.4
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.7e-155 552.7 516 56.4
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.8e-155 551.2 504 57.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.3e-154 550.4 506 56.3
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.6e-154 548.1 512 57.2
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.6e-154 548.1 512 57.2
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.5e-153 546.2 517 55.7
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.6e-152 542.3 502 56.6
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-150 537.0 527 53.5
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.5e-150 537.0 514 55.6
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.0e-150 536.6 509 55.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 7.6e-150 534.6 508 55.3
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 2.9e-149 532.7 517 54.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 3.8e-149 532.3 525 53.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 3.8e-149 532.3 525 54.3
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.1e-148 530.8 514 55.4
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-148 530.8 503 56.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.1e-148 530.8 519 54.9
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-148 530.4 513 54.6
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-148 530.4 521 55.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 5.4e-148 528.5 519 54.5
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.7e-147 526.2 510 55.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.7e-147 526.2 512 54.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.0e-147 525.0 502 56.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.0e-146 524.2 512 55.5
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.3e-146 523.1 499 56.1
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 6.6e-146 521.5 501 53.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.6e-146 521.5 523 54.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.5e-145 520.4 516 56.0
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.3e-145 519.2 504 56.0
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 4.3e-145 518.8 505 54.3
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.3e-145 518.8 518 54.4
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 4.3e-145 518.8 488 55.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 7.3e-145 518.1 505 55.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.6e-145 517.7 516 55.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.6e-144 516.9 508 55.1
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.1e-144 516.5 511 54.2
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 2.8e-144 516.2 495 56.4
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.6e-144 515.8 500 55.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 6.2e-144 515.0 502 55.4
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-143 514.2 368 67.7
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.4e-143 513.1 506 55.5
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.1e-143 512.7 508 52.4
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 9.0e-143 511.1 510 54.9
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.5e-142 510.4 495 53.5
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.6e-142 509.6 500 55.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.4e-142 508.8 508 52.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 7.6e-142 508.1 514 53.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 9.9e-142 507.7 500 55.2
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 3.8e-141 505.8 504 54.0
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 6.4e-141 505.0 522 52.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 6.4e-141 505.0 512 53.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 8.4e-141 504.6 522 52.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 8.4e-141 504.6 522 52.5
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 8.4e-141 504.6 510 53.3
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-140 504.2 522 52.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.4e-140 503.8 512 54.5
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.4e-140 503.1 522 52.7
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.2e-140 502.7 517 51.6
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 5.4e-140 501.9 522 52.7
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.4e-140 501.9 515 53.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.2e-139 500.7 496 53.2
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.5e-139 499.2 522 51.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.6e-139 498.8 496 53.8
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.3e-138 497.3 361 66.8
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.3e-138 497.3 448 56.2
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.7e-138 496.9 500 53.2
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-137 492.7 457 56.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 3.3e-137 492.7 523 51.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 7.3e-137 491.5 521 51.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 4.8e-136 488.8 530 50.8
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.2e-136 488.4 517 52.8
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-135 487.6 371 63.6
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.4e-135 487.3 524 51.7
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-135 484.6 519 51.1
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 9.0e-135 484.6 508 51.8
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-134 484.2 519 50.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.6e-134 483.0 498 52.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 9.9e-134 481.1 510 51.4
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 9.9e-134 481.1 514 50.8
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-133 480.3 521 50.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-133 479.9 547 47.7
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 6.4e-133 478.4 507 51.5
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-132 477.6 519 50.9
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 5.4e-132 475.3 505 50.9
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.6e-131 473.8 526 49.0
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 4.6e-131 472.2 506 50.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 4.6e-131 472.2 526 48.7
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 6.0e-131 471.9 505 50.5
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.0e-130 471.1 457 53.0
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.0e-130 471.1 510 50.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-130 469.5 511 49.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-130 469.2 365 60.5
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 3.9e-130 469.2 527 48.4
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 9.6e-129 464.5 363 61.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.1e-128 463.4 527 48.8
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 6.2e-128 461.8 520 49.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-127 460.7 464 51.7
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.2e-126 457.6 346 63.6
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.9e-124 450.3 476 50.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.2e-124 449.5 473 52.6
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.9e-122 442.6 537 46.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 6.7e-122 441.8 359 58.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 8.7e-122 441.4 513 48.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-121 440.7 512 49.4
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.7e-121 438.7 502 47.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.7e-121 438.7 541 45.5
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.3e-120 437.6 360 61.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-119 433.7 299 68.9
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-115 419.5 519 46.6
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.8e-114 417.2 518 45.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 4.1e-111 406.0 519 45.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-107 394.4 493 46.2
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.9e-106 389.4 519 43.9
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.0e-102 377.1 263 68.1
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.4e-97 359.4 361 45.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.3e-96 357.8 462 46.3
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.3e-95 352.4 515 42.9
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.4e-89 332.8 333 45.3
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 2.2e-85 320.5 520 40.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.7e-83 313.5 381 47.0
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.4e-71 273.9 188 64.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-68 264.6 280 51.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.0e-61 241.9 308 46.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.6e-61 238.8 244 50.8
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.6e-59 233.4 152 69.1
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.3e-53 214.9 457 37.2
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 8.1e-51 205.7 198 54.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-45 188.3 320 35.9
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.2e-40 171.0 116 67.2
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.3e-29 134.4 254 37.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.4e-23 114.4 176 42.6
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 7.1e-23 112.8 194 39.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.6e-22 110.2 170 39.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.8e-19 100.9 385 24.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.2e-15 87.0 147 41.5
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.4e-10 71.2 137 30.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-09 68.9 58 56.9
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-09 68.6 54 59.3
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 5.8e-09 66.6 54 57.4
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 5.8e-09 66.6 58 55.2
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.9e-08 63.5 51 58.8


User provided reference genes

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