Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 9.4e-119 430.3 224 100.0
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.2e-78 297.0 190 76.3
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 2.1e-78 296.2 222 68.9
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 8.9e-77 290.8 191 73.3
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 1.5e-76 290.0 207 72.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 2.6e-76 289.3 213 69.5
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.4e-76 288.5 197 72.1
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 3.7e-75 285.4 191 72.8
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 6.4e-75 284.6 197 69.5
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.1e-74 283.9 191 72.3
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.4e-74 283.5 210 68.1
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.4e-74 283.5 189 72.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.9e-74 283.1 210 67.1
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 1.9e-74 283.1 228 66.2
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 3.2e-74 282.3 188 71.8
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 5.4e-74 281.6 189 73.0
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 9.2e-74 280.8 217 67.7
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.2e-73 280.4 205 68.3
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 6.0e-73 278.1 217 65.9
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 6.0e-73 278.1 223 63.7
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.0e-72 277.3 219 67.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 3.0e-72 275.8 191 69.6
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-72 275.8 215 64.7
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 3.9e-72 275.4 215 67.9
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 8.6e-72 274.2 203 66.5
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.6e-72 274.2 209 67.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.1e-71 273.9 197 68.0
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.1e-71 273.9 176 77.3
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 1.1e-71 273.9 205 67.8
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.1e-71 273.9 221 65.6
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.5e-71 273.5 222 64.0
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.9e-71 273.1 207 66.2
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 3.3e-71 272.3 223 63.2
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 3.3e-71 272.3 211 65.9
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 3.3e-71 272.3 199 68.8
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.3e-71 272.3 210 66.2
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 4.3e-71 271.9 204 68.6
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.6e-70 270.0 191 67.5
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.6e-70 270.0 191 68.6
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.6e-70 270.0 190 69.5
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 2.1e-70 269.6 192 69.8
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.8e-70 269.2 222 63.1
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 3.6e-70 268.9 219 66.2
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 3.6e-70 268.9 201 65.7
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.7e-70 268.5 190 68.9
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 4.7e-70 268.5 184 70.7
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 4.7e-70 268.5 201 65.7
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.1e-69 267.3 198 66.2
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-69 267.3 190 68.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.1e-69 267.3 203 65.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.8e-69 266.5 186 70.4
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.3e-69 266.2 200 67.0
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.1e-69 265.8 193 67.9
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.1e-69 265.8 200 67.0
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.6e-68 262.7 187 71.1
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 5.8e-68 261.5 218 61.9
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 7.5e-68 261.2 232 60.8
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 7.5e-68 261.2 199 65.8
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 7.5e-68 261.2 232 60.3
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 7.5e-68 261.2 206 67.5
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 7.5e-68 261.2 175 72.0
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 9.8e-68 260.8 214 65.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.3e-67 260.4 185 71.4
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.3e-67 260.4 192 69.3
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.2e-67 259.6 212 62.3
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 2.2e-67 259.6 193 65.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 3.7e-67 258.8 174 73.6
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 6.4e-67 258.1 222 62.6
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 6.4e-67 258.1 214 60.7
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 8.3e-67 257.7 212 62.7
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.1e-66 257.3 190 66.3
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.4e-66 256.9 188 67.6
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 2.4e-66 256.1 184 69.6
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.4e-66 256.1 204 66.2
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 3.2e-66 255.8 191 66.0
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.6e-65 253.4 203 64.5
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-65 253.4 204 65.7
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 2.1e-65 253.1 180 67.2
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-65 252.7 212 60.8
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 7.8e-65 251.1 197 60.4
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 3.9e-64 248.8 210 61.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 6.6e-64 248.1 216 61.1
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 8.6e-64 247.7 216 61.1
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 9.5e-63 244.2 217 60.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.6e-62 243.4 145 80.7
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.4e-61 240.4 216 59.3
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.1e-61 239.2 190 63.2
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.6e-60 236.1 191 62.3
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 2.6e-60 236.1 200 59.0
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 3.4e-60 235.7 298 49.0
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 4.4e-60 235.3 186 65.6
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.3e-59 233.8 187 63.1
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.2e-57 227.3 197 59.9
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 4.6e-57 225.3 170 64.7
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 5.6e-55 218.4 142 73.9
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 7.3e-55 218.0 187 59.9
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.4e-53 213.8 187 59.4
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 4.0e-53 212.2 187 59.4
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 6.8e-53 211.5 282 45.4
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.1e-50 204.1 229 50.2
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.9e-47 193.4 154 63.0
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.9e-47 193.4 154 63.0
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.1e-45 186.0 169 57.4
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 5.3e-45 185.3 156 59.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.5e-39 167.2 100 80.0
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 6.9e-37 158.3 162 53.1
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 4.5e-36 155.6 162 51.2
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 7.6e-36 154.8 162 51.9
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-34 151.0 98 72.4
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.3e-31 139.0 187 44.9
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.4e-29 133.3 134 57.5
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 4.0e-29 132.5 79 77.2
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.3e-27 127.5 79 77.2
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-27 126.7 78 78.2
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.5e-26 123.2 79 74.7
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.3e-22 110.9 217 35.0
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 1.1e-18 97.8 95 54.7
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 2.5e-18 96.7 61 70.5
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 7.2e-18 95.1 61 68.9
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-15 87.4 54 77.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 9.7e-15 84.7 77 55.8
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.6e-09 67.4 39 76.9
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 4.6e-09 65.9 40 75.0
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 3.9e-08 62.8 40 70.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.9e-08 62.8 39 74.4
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 1.5e-07 60.8 35 82.9
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 6.3e-06 55.5 69 46.4


User provided reference genes

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