Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.8e-79 298.5 145 100.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 8.1e-39 164.1 108 75.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 8.1e-39 164.1 189 49.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.4e-38 163.3 128 63.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.8e-38 162.9 116 71.6
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.4e-38 162.5 95 84.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.3e-38 161.4 94 80.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.3e-38 161.4 169 55.6
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.9e-38 161.0 108 74.1
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.9e-38 161.0 196 49.5
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.5e-37 159.8 104 75.0
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-37 159.8 104 75.0
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.5e-37 159.8 104 75.0
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.5e-37 159.8 102 76.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-37 159.5 95 81.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.0e-37 159.5 95 81.1
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-37 159.5 95 80.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-37 159.5 95 80.0
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-37 159.5 95 80.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.0e-37 159.5 188 48.9
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.6e-37 159.1 93 82.8
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.4e-37 158.7 114 68.4
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.4e-37 158.7 112 68.8
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 3.4e-37 158.7 128 61.7
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 4.5e-37 158.3 120 67.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.5e-37 158.3 94 78.7
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.5e-37 158.3 101 75.2
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 5.8e-37 157.9 101 77.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 7.6e-37 157.5 95 81.1
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 9.9e-37 157.1 95 81.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-36 156.8 103 74.8
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-36 156.8 103 74.8
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.7e-36 156.4 93 78.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.7e-36 156.4 104 74.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-36 156.0 193 47.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.2e-36 156.0 193 47.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-36 155.6 111 68.5
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.8e-36 155.2 94 78.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-36 155.2 103 73.8
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.8e-36 155.2 105 70.5
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 3.8e-36 155.2 117 66.7
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 3.8e-36 155.2 109 71.6
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 4.9e-36 154.8 108 72.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.9e-36 154.8 94 79.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 4.9e-36 154.8 92 80.4
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.4e-36 154.5 113 65.5
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 8.4e-36 154.1 104 74.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.1e-35 153.7 92 82.6
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-35 153.7 103 72.8
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-35 153.7 103 72.8
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.9e-35 152.9 101 76.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.9e-35 152.9 88 80.7
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.2e-35 152.1 92 81.5
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 3.2e-35 152.1 101 73.3
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 3.2e-35 152.1 107 74.8
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.2e-35 152.1 130 58.5
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.2e-35 152.1 106 69.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.2e-35 151.8 123 61.0
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 4.2e-35 151.8 109 69.7
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 7.1e-35 151.0 103 71.8
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 7.1e-35 151.0 101 75.2
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.3e-35 150.6 89 84.3
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.3e-35 150.6 89 79.8
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 9.3e-35 150.6 89 77.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-34 150.2 93 79.6
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.6e-34 149.8 109 67.9
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.6e-34 149.8 89 78.7
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.6e-34 149.8 110 70.0
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.6e-34 149.8 143 53.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.7e-34 149.1 147 53.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.7e-34 149.1 118 60.2
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.7e-34 149.1 100 75.0
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.7e-34 149.1 104 71.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.5e-34 148.7 92 78.3
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.5e-34 148.7 93 72.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.6e-34 148.3 124 59.7
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 6.0e-34 147.9 95 76.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.9e-34 147.5 110 70.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 7.9e-34 147.5 191 42.9
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 7.9e-34 147.5 98 73.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 7.9e-34 147.5 147 52.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 7.9e-34 147.5 92 73.9
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.0e-33 147.1 107 69.2
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.3e-33 146.7 102 72.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.3e-33 146.7 101 68.3
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.8e-33 146.4 106 69.8
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.3e-33 146.0 130 61.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 3.0e-33 145.6 92 73.9
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.0e-33 145.6 106 67.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 3.9e-33 145.2 100 71.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.7e-33 144.4 88 76.1
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 6.7e-33 144.4 111 64.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 6.7e-33 144.4 105 65.7
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 8.7e-33 144.1 106 67.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.5e-32 143.3 146 52.7
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.5e-32 143.3 94 77.7
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.9e-32 142.9 113 64.6
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.9e-32 142.9 106 64.2
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.9e-32 142.9 99 70.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.9e-32 142.9 121 60.3
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.5e-32 142.5 106 67.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.5e-32 142.5 130 56.9
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 3.3e-32 142.1 104 68.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-32 142.1 88 73.9
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.3e-32 142.1 99 68.7
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 7.4e-32 141.0 89 74.2
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 7.4e-32 141.0 89 74.2
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 9.6e-32 140.6 88 76.1
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 9.6e-32 140.6 88 76.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-31 140.2 111 64.9
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.6e-31 139.8 93 71.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-31 139.4 88 73.9
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.1e-31 139.4 88 73.9
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.1e-31 139.4 88 73.9
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.8e-31 139.0 93 68.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.8e-31 139.0 93 68.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 4.8e-31 138.3 89 73.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-30 137.1 194 40.7
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-30 137.1 105 70.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-30 137.1 105 70.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.4e-30 136.7 106 64.2
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.4e-30 136.0 99 69.7
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 3.1e-30 135.6 103 64.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 4.0e-30 135.2 126 57.9
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 6.9e-30 134.4 104 62.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.4e-29 132.1 144 47.9
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 4.5e-29 131.7 91 70.3
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.6e-29 131.0 96 65.6
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-28 130.2 94 71.3
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-28 130.2 132 54.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.7e-28 129.8 163 49.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.7e-28 129.8 121 57.9
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-28 129.0 94 64.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.9e-28 129.0 110 62.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.8e-28 128.6 111 60.4
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.8e-28 128.6 111 60.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 3.8e-28 128.6 103 64.1
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.9e-27 126.3 200 42.5
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 4.2e-27 125.2 91 62.6
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 5.5e-27 124.8 95 65.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.5e-26 122.1 111 56.8
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.3e-25 119.4 112 58.0
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.0e-25 119.0 132 48.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-23 113.6 94 61.7
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.3e-22 108.2 75 70.7
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-21 106.7 72 72.2
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.9e-20 102.4 70 70.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.9e-20 101.7 66 75.8
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 7.9e-18 94.4 63 73.0
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 7.9e-18 94.4 216 34.3
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-16 90.1 92 51.1
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.3e-15 87.0 52 76.9
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.2e-15 86.3 73 63.0
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-15 86.3 60 70.0
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.8e-15 85.9 58 69.0
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.2e-13 80.5 58 63.8
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.2e-13 80.5 54 64.8
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.0e-13 79.7 48 68.8
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 7.7e-13 77.8 44 86.4
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.7e-12 76.6 52 69.2
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 3.6e-10 68.9 108 37.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 5.1e-09 65.1 39 82.1
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.1e-09 65.1 44 70.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.1e-09 65.1 44 70.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 6.7e-09 64.7 52 59.6


User provided reference genes

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