Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 1.7e-70 269.2 140 100.0
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.5e-31 138.7 85 83.5
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 3.5e-31 138.7 121 63.6
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 1.8e-30 136.3 99 73.7
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 1.8e-30 136.3 85 80.0
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.3e-30 136.0 82 82.9
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.3e-30 136.0 85 80.0
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 3.0e-30 135.6 82 82.9
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.0e-30 135.6 87 80.5
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 3.9e-30 135.2 97 72.2
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 5.1e-30 134.8 90 74.4
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 5.1e-30 134.8 85 80.0
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.5e-29 133.3 90 74.4
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.9e-29 132.9 89 73.0
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.9e-29 132.9 88 73.9
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 2.5e-29 132.5 84 78.6
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 2.5e-29 132.5 85 78.8
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.5e-29 132.5 85 77.6
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.5e-29 132.5 85 77.6
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 2.5e-29 132.5 85 77.6
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 2.5e-29 132.5 88 75.0
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.5e-29 132.5 88 75.0
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 4.3e-29 131.7 84 78.6
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.3e-29 131.7 82 81.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 4.3e-29 131.7 82 81.7
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 4.3e-29 131.7 85 77.6
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 5.6e-29 131.3 85 76.5
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 7.4e-29 131.0 85 77.6
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 7.4e-29 131.0 85 77.6
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 9.6e-29 130.6 84 78.6
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.3e-28 130.2 84 78.6
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 1.3e-28 130.2 84 78.6
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.3e-28 130.2 84 78.6
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.3e-28 130.2 85 76.5
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.3e-28 130.2 88 73.9
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.3e-28 130.2 88 73.9
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.6e-28 129.8 89 71.9
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.6e-28 129.8 85 75.3
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.6e-28 129.8 84 77.4
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.6e-28 129.8 84 77.4
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 1.6e-28 129.8 84 78.6
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 1.6e-28 129.8 83 79.5
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.1e-28 129.4 84 77.4
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.1e-28 129.4 84 77.4
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.1e-28 129.4 84 77.4
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 2.1e-28 129.4 84 77.4
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 2.8e-28 129.0 84 77.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 2.8e-28 129.0 84 76.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 3.6e-28 128.6 89 69.7
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 4.8e-28 128.3 84 76.2
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 4.8e-28 128.3 80 77.5
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 4.8e-28 128.3 92 73.9
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 6.2e-28 127.9 84 76.2
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 6.2e-28 127.9 78 80.8
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 8.1e-28 127.5 84 76.2
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 8.1e-28 127.5 84 76.2
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 8.1e-28 127.5 84 75.0
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 8.1e-28 127.5 84 76.2
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.1e-27 127.1 86 75.6
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.4e-27 126.7 85 72.9
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.4e-27 126.7 84 76.2
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.4e-27 126.7 85 75.3
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 1.8e-27 126.3 84 75.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.1e-27 125.6 81 77.8
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 3.1e-27 125.6 85 71.8
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 5.3e-27 124.8 85 74.1
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 6.9e-27 124.4 79 77.2
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 9.0e-27 124.0 85 76.5
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 9.0e-27 124.0 85 76.5
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 9.0e-27 124.0 85 76.5
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.0e-27 124.0 79 79.7
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.0e-27 124.0 79 79.7
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 9.0e-27 124.0 79 79.7
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.2e-26 123.6 89 68.5
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.2e-26 123.6 106 63.2
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.2e-26 123.6 84 73.8
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.2e-26 123.6 84 73.8
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 1.5e-26 123.2 86 74.4
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.0e-26 122.9 79 74.7
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 2.6e-26 122.5 85 72.9
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 2.6e-26 122.5 84 72.6
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 3.4e-26 122.1 85 71.8
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 4.5e-26 121.7 80 76.2
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 5.8e-26 121.3 89 69.7
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 7.6e-26 120.9 85 71.8
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 9.9e-26 120.6 85 74.1
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 9.9e-26 120.6 84 70.2
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 9.9e-26 120.6 85 71.8
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 9.9e-26 120.6 85 68.2
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.7e-25 119.8 85 70.6
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 2.2e-25 119.4 81 70.4
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.9e-25 119.0 81 70.4
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 3.8e-25 118.6 81 69.1
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 3.8e-25 118.6 81 70.4
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.8e-25 118.6 85 69.4
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 4.9e-25 118.2 81 70.4
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 4.9e-25 118.2 83 68.7
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 4.9e-25 118.2 81 75.3
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 6.4e-25 117.9 83 68.7
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 6.4e-25 117.9 85 70.6
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 1.1e-24 117.1 85 67.1
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-24 116.7 81 69.1
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.4e-24 116.7 81 69.1
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.4e-24 116.7 81 69.1
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.9e-24 116.3 81 69.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.2e-24 115.2 81 67.9
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 4.2e-24 115.2 85 67.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.7e-23 112.5 89 62.9
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.6e-23 111.7 79 70.9
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 4.6e-23 111.7 79 70.9
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.9e-23 110.9 79 70.9
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 6.7e-22 107.8 81 70.4
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 8.7e-22 107.5 81 67.9
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 7.4e-21 104.4 80 65.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 6.2e-20 101.3 86 59.3
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 5.3e-19 98.2 77 64.9
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 5.8e-18 94.7 78 57.7
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 2.9e-17 92.4 78 57.7
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 3.8e-17 92.0 49 89.8
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.4e-16 90.1 67 73.1
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.2e-16 89.0 67 67.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 3.2e-16 89.0 67 67.2
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 5.5e-16 88.2 81 55.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 7.1e-16 87.8 68 60.3
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 7.1e-16 87.8 81 55.6
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.3e-16 87.4 68 64.7
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.2e-15 87.0 89 55.1
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.2e-15 87.0 68 64.7
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.6e-15 86.7 68 63.2
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 2.7e-15 85.9 51 80.4
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 2.7e-15 85.9 85 54.1
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 3.5e-15 85.5 81 51.9
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 3.5e-15 85.5 67 65.7
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 1.8e-14 83.2 76 51.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 6.3e-12 74.7 51 68.6
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 6.3e-12 74.7 51 68.6
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 5.3e-11 71.6 73 49.3
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.0e-11 70.9 76 47.4
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 1.5e-10 70.1 61 60.7
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 7.6e-10 67.8 71 50.7
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.3e-09 67.0 87 46.0
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 9.3e-08 60.8 69 42.0
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 7.9e-07 57.8 71 43.7
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 1.3e-06 57.0 78 38.5


User provided reference genes

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