Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 0.0e+00 1434.5 703 100.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.8e-285 985.7 682 67.9
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 2.2e-278 962.2 682 66.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 1.8e-277 959.1 681 66.5
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 2.0e-276 955.7 681 65.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 4.2e-274 948.0 682 64.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 2.1e-273 945.7 682 64.2
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 2.7e-273 945.3 682 65.0
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 8.8e-272 940.3 682 65.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 5.7e-271 937.6 683 64.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 5.7e-271 937.6 681 65.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 2.2e-270 935.6 673 64.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.8e-270 935.3 686 64.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 4.8e-270 934.5 682 64.1
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 1.1e-269 933.3 681 64.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.8e-269 932.6 694 64.3
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 1.8e-269 932.6 681 64.5
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.2e-268 929.9 686 63.4
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.5e-268 929.5 671 64.8
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 1.5e-268 929.5 682 64.1
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 7.7e-268 927.2 681 64.3
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-267 926.8 681 64.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 1.3e-267 926.4 681 64.0
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.2e-267 925.6 686 63.6
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.1e-266 923.3 675 64.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-266 922.9 686 63.0
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 7.2e-266 920.6 675 63.9
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 9.4e-266 920.2 682 62.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 2.7e-265 918.7 683 64.4
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.9e-265 917.1 640 66.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 1.8e-264 916.0 674 63.8
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 1.8e-264 916.0 682 64.2
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 3.9e-264 914.8 682 63.0
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.9e-264 914.8 674 63.6
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 1.5e-263 912.9 682 62.6
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.3e-262 909.8 681 63.1
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 2.2e-262 909.1 682 62.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 3.7e-262 908.3 673 64.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 6.3e-262 907.5 681 63.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 8.2e-262 907.1 683 62.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 1.4e-261 906.4 682 62.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 9.1e-261 903.7 673 63.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.6e-260 902.1 682 61.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 3.5e-260 901.7 683 62.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 4.5e-260 901.4 682 61.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 1.1e-258 896.7 682 63.0
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 1.1e-258 896.7 682 61.1
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 1.9e-258 896.0 683 61.5
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 4.2e-258 894.8 682 61.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 9.4e-258 893.6 682 61.7
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 2.7e-257 892.1 682 61.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 3.6e-257 891.7 682 61.1
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 3.9e-256 888.3 693 61.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.5e-255 886.3 681 61.2
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 1.5e-255 886.3 681 61.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 1.5e-255 886.3 681 61.2
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 4.4e-255 884.8 668 62.9
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 5.7e-255 884.4 682 61.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 1.7e-254 882.9 683 60.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 2.2e-254 882.5 665 62.3
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 1.1e-253 880.2 682 60.3
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.4e-253 879.8 681 61.1
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 5.3e-253 877.9 686 59.8
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 5.3e-253 877.9 681 60.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 5.3e-253 877.9 686 60.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 7.0e-253 877.5 683 60.3
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 2.6e-252 875.5 683 60.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 2.6e-252 875.5 680 60.3
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 1.0e-251 873.6 681 61.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.7e-251 872.8 665 61.8
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 5.0e-251 871.3 665 61.8
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.9e-250 869.4 683 60.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 2.5e-250 869.0 682 60.7
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 4.2e-250 868.2 685 60.0
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 6.1e-249 864.4 671 60.4
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 2.3e-248 862.4 683 61.1
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 4.0e-248 861.7 682 59.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 5.2e-248 861.3 701 58.1
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 8.8e-248 860.5 682 60.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 3.4e-247 858.6 682 60.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 7.5e-247 857.4 740 56.9
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 3.2e-242 842.0 681 58.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 4.7e-241 838.2 777 53.7
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 3.0e-240 835.5 861 49.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 2.0e-239 832.8 681 59.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 1.3e-238 830.1 710 57.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.2e-236 823.5 673 57.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 5.9e-236 821.2 682 57.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 8.0e-233 810.8 678 58.6
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 1.8e-232 809.7 686 56.7
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 6.8e-232 807.7 759 53.4
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 1.1e-229 800.4 741 54.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.6e-225 786.6 673 57.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 3.1e-224 782.3 682 56.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.2e-222 776.2 632 59.7
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.9e-218 763.1 681 53.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 2.6e-215 752.7 671 56.5
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 3.4e-215 752.3 673 54.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.1e-210 737.3 692 50.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 3.3e-210 735.7 692 50.9
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 2.8e-209 732.6 686 53.2
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 5.2e-208 728.4 674 51.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.5e-196 689.1 502 64.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 6.4e-182 641.7 488 62.3
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.8e-169 599.0 436 65.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.5e-167 594.0 424 64.9
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 5.5e-165 585.5 635 46.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.7e-154 548.1 525 51.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 2.4e-152 543.5 681 45.7
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.8e-129 466.1 454 51.8
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 3.2e-104 383.6 425 45.4
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 8.6e-102 375.6 263 66.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.8e-92 344.0 246 65.0
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.1e-88 332.0 217 70.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.3e-70 271.2 204 61.8
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 1.5e-66 258.5 199 60.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.5e-66 256.9 570 31.9
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 8.4e-65 252.7 194 59.8
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.0e-62 244.2 176 63.6
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.4e-56 225.3 255 45.1
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.5e-53 215.3 176 56.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 6.3e-44 183.3 253 42.3
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.8e-43 181.8 214 45.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.8e-33 147.5 183 38.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.8e-30 136.3 130 50.8
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 5.3e-27 127.1 169 40.8
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.8e-20 104.8 106 48.1
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 4.1e-19 100.9 89 52.8
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 7.2e-16 90.1 71 59.2
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 2.3e-14 85.1 222 29.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 8.8e-14 83.2 85 50.6
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.7e-12 79.0 204 26.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 8.3e-12 76.6 57 59.6
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.4e-11 75.1 163 30.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.8e-09 67.8 141 29.1
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 6.5e-09 67.0 37 78.4
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.2e-08 64.7 35 80.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.1e-07 62.0 182 25.8
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.8e-07 61.6 79 39.2
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-07 61.6 102 31.4
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.3e-06 58.5 34 73.5
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.0e-06 57.8 84 32.1
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 6.8e-06 57.0 57 49.1


User provided reference genes

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