Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 4.1e-104 381.3 186 100.0
Cfa023003 Carpinus fangiana HOM05D001966 ORTHO05D011119 6.1e-47 191.4 87 100.0
arahy.Tifrunner.gnm1.ann1.H5WC3R Arachis hypogaea HOM05D001966 ORTHO05D011119 2.3e-46 189.5 87 98.9
arahy.Tifrunner.gnm1.ann1.KT8FLV Arachis hypogaea HOM05D001966 ORTHO05D011119 2.2e-44 183.0 87 95.4
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 3.7e-44 182.2 87 95.4
arahy.Tifrunner.gnm1.ann1.2KV113 Arachis hypogaea HOM05D000580 ORTHO05D011119 5.3e-43 178.3 86 94.2
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 7.0e-43 177.9 87 92.0
arahy.Tifrunner.gnm1.ann1.KXW2A6 Arachis hypogaea HOM05D001966 ORTHO05D011119 1.7e-41 173.3 83 96.4
arahy.Tifrunner.gnm1.ann1.1DF8CR Arachis hypogaea HOM05D001966 ORTHO05D011119 3.8e-41 172.2 80 97.5
SEGI_31611 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 3.8e-41 172.2 87 93.1
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 3.3e-37 159.1 111 74.8
Gohir.1Z049692 Gossypium hirsutum HOM05D001966 ORTHO05D011119 1.3e-36 157.1 72 100.0
Gohir.1Z050866 Gossypium hirsutum HOM05D001966 ORTHO05D011119 1.3e-36 157.1 72 100.0
arahy.Tifrunner.gnm1.ann1.9XT8BN Arachis hypogaea HOM05D001966 ORTHO05D010127 4.8e-36 155.2 72 98.6
Gohir.A01G119800 Gossypium hirsutum HOM05D001966 ORTHO05D011119 1.1e-35 154.1 72 98.6
ScUNg0000270 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.1e-35 154.1 72 98.6
SEGI_24666 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 5.3e-35 151.8 87 85.1
Gohir.A10G178000 Gossypium hirsutum HOM05D001966 ORTHO05D011119 9.1e-35 151.0 72 95.8
Hma1.2p1_0051F.1_g029255 Hydrangea macrophylla HOM05D001966 ORTHO05D011119 2.0e-34 149.8 72 94.4
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 4.5e-34 148.7 76 85.5
Potri.011G074067 Populus trichocarpa HOM05D001966 ORTHO05D011119 4.5e-34 148.7 72 95.8
Gorai.007G237900 Gossypium raimondii HOM05D001966 ORTHO05D011119 7.7e-34 147.9 72 94.4
Phvul.001G037800 Phaseolus vulgaris HOM05D001966 ORTHO05D011119 5.5e-32 141.7 72 90.3
Gohir.A05G366050 Gossypium hirsutum HOM05D001966 ORTHO05D011119 3.0e-30 136.0 70 88.6
Gohir.D05G230250 Gossypium hirsutum HOM05D001966 ORTHO05D011119 4.0e-30 135.6 72 84.7
arahy.Tifrunner.gnm1.ann1.CV40CV Arachis hypogaea HOM05D001966 ORTHO05D010127 8.8e-30 134.4 65 96.9
Nitab4.5_0003644g0040 Nicotiana tabacum HOM05D001966 ORTHO05D010127 4.4e-29 132.1 74 82.4
Gohir.D02G156751 Gossypium hirsutum HOM05D001966 ORTHO05D011119 9.8e-29 131.0 65 93.8
Gorai.005G175800 Gossypium raimondii HOM05D001966 ORTHO05D011119 1.7e-28 130.2 65 93.8
Glyma.11G218300 Glycine max HOM05D001966 ORTHO05D011119 1.1e-27 127.5 82 78.0
arahy.Tifrunner.gnm1.ann1.MHEL4J Arachis hypogaea HOM05D001966 ORTHO05D011119 2.4e-27 126.3 64 96.9
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 4.1e-27 125.6 59 98.3
BcaNung07086 Brassica carinata HOM05D001966 ORTHO05D011119 5.4e-27 125.2 58 100.0
arahy.Tifrunner.gnm1.ann1.FF8QKQ Arachis hypogaea HOM05D001966 ORTHO05D011119 7.0e-27 124.8 75 82.7
Manes.13G063850 Manihot esculenta HOM05D001966 ORTHO05D011119 1.9e-24 116.7 73 76.7
TPR.G40147 Trifolium pratense HOM05D003168 ORTHO05D011119 5.5e-24 115.2 76 69.7
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-23 113.6 61 88.5
Gohir.A04G110920 Gossypium hirsutum HOM05D001966 ORTHO05D011119 8.0e-23 111.3 72 72.2
Gohir.A04G110980 Gossypium hirsutum HOM05D001966 ORTHO05D011119 8.0e-23 111.3 72 72.2
Oeu012760.1 Olea europaea HOM05D001966 ORTHO05D010127 3.0e-22 109.4 62 82.3
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 9.8e-21 104.4 87 64.4
ECA246G3863 Erigeron canadensis HOM05D002697 ORTHO05D003087 1.3e-20 104.0 49 93.9
arahy.Tifrunner.gnm1.ann1.VLT00F Arachis hypogaea HOM05D001966 ORTHO05D011119 1.9e-16 90.1 45 95.6
Migut.B01248 Erythranthe guttata HOM05D001966 ORTHO05D011119 1.9e-16 90.1 58 77.6
Sc05g0009610 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.2e-15 87.4 42 97.6
Nitab4.5_0000289g0040 Nicotiana tabacum HOM05D001966 ORTHO05D011119 2.8e-15 86.3 47 78.7
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.1e-14 82.8 101 41.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 6.8e-14 81.6 121 40.5
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.7e-12 77.0 153 34.6
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.9e-12 76.3 84 44.0
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.4e-11 73.9 153 33.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.9e-11 73.6 88 42.0
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.4e-11 73.2 153 29.4
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.1e-11 72.4 82 43.9
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 4.1e-11 72.4 114 37.7
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 5.4e-11 72.0 87 41.4
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 7.0e-11 71.6 88 39.8
Sopen04g018020 Solanum pennellii HOM05D001966 ORTHO05D011119 7.0e-11 71.6 44 84.1
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.2e-10 70.9 88 39.8
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.2e-10 70.9 88 44.3
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.2e-10 70.9 81 42.0
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.6e-10 70.5 121 36.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.6e-10 70.5 70 48.6
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.6e-10 70.5 88 40.9
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.6e-10 70.5 80 42.5
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.0e-10 70.1 90 38.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 4.6e-10 68.9 88 39.8
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.6e-10 68.9 117 31.6
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.0e-09 67.8 78 42.3
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.0e-09 67.8 78 41.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.7e-09 67.0 88 39.8
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.7e-09 67.0 84 42.9
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.7e-09 67.0 88 39.8
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.7e-09 67.0 88 39.8
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.7e-09 67.0 89 37.1
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.3e-09 66.6 88 42.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 3.0e-09 66.2 128 28.9
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.9e-09 65.9 88 42.0
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.9e-09 65.9 86 41.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 5.0e-09 65.5 78 41.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 5.0e-09 65.5 147 27.9
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 6.6e-09 65.1 145 29.0
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 8.6e-09 64.7 89 36.0
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.6e-09 64.7 84 40.5
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.1e-08 64.3 78 39.7
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.1e-08 64.3 84 38.1
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.1e-08 64.3 84 36.9
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.5e-08 63.9 106 36.8
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.5e-08 63.9 122 35.2
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.5e-08 63.9 105 39.0
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.9e-08 63.5 90 37.8
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.5e-08 63.2 64 48.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 4.3e-08 62.4 110 34.5
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 5.6e-08 62.0 76 43.4
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 5.6e-08 62.0 99 35.4
arahy.Tifrunner.gnm1.ann1.CSY78X Arachis hypogaea HOM05D000216 ORTHO05D000634 7.3e-08 61.6 27 92.6
Nitab4.5_0003550g0060 Nicotiana tabacum HOM05D001966 ORTHO05D011119 7.3e-08 61.6 23 100.0
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 7.3e-08 61.6 99 32.3
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.6e-07 60.5 78 39.7
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.6e-07 60.5 58 50.0
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.6e-07 60.5 59 49.2
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.6e-07 60.5 148 29.7
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.8e-07 59.7 78 39.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.8e-07 59.7 76 38.2
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.8e-07 59.7 57 50.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.6e-07 59.3 84 35.7
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.6e-07 59.3 74 37.8
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.6e-07 59.3 83 37.3
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 3.6e-07 59.3 79 35.4
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 4.7e-07 58.9 111 31.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 6.2e-07 58.5 65 44.6
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 6.2e-07 58.5 114 32.5
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 8.0e-07 58.2 76 40.8
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.1e-06 57.8 105 34.3
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.1e-06 57.8 91 35.2
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-06 57.8 64 43.8
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.4e-06 57.4 83 30.1
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.4e-06 57.4 88 37.5
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.8e-06 57.0 89 38.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.8e-06 57.0 101 37.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.8e-06 57.0 105 37.1
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.3e-06 56.6 78 34.6
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 3.1e-06 56.2 101 36.6
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-06 56.2 101 36.6
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 3.1e-06 56.2 106 35.8
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.1e-06 56.2 76 39.5
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 3.1e-06 56.2 63 44.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.2e-06 55.5 96 36.5
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 5.2e-06 55.5 99 36.4
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 5.2e-06 55.5 62 43.5
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 5.2e-06 55.5 64 39.1
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 5.2e-06 55.5 70 42.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 8.9e-06 54.7 96 36.5
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.9e-06 54.7 114 32.5


User provided reference genes

Program Settings