Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.9e-69 265.8 141 100.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.1e-62 241.1 151 86.8
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.8e-58 227.6 141 83.0
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 7.1e-56 220.7 141 78.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 5.1e-54 214.5 141 75.9
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 8.7e-54 213.8 137 79.6
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 8.7e-54 213.8 139 79.1
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 8.7e-54 213.8 141 75.9
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.7e-54 213.8 141 78.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.5e-53 213.0 141 75.9
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.5e-53 213.0 139 76.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.5e-53 212.2 141 75.9
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.5e-53 212.2 135 79.3
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 3.3e-53 211.8 135 79.3
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.3e-53 211.8 135 79.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.3e-53 211.8 135 79.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 3.3e-53 211.8 141 75.2
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.3e-53 211.5 141 78.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 4.3e-53 211.5 137 78.8
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 5.6e-53 211.1 139 78.4
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 7.4e-53 210.7 141 75.9
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.6e-53 210.3 141 75.2
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.3e-52 209.9 137 77.4
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 135 77.8
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 1.6e-52 209.5 141 75.2
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.1e-52 209.1 139 74.8
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.8e-52 208.8 141 74.5
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.8e-52 208.8 141 74.5
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.6e-52 208.4 139 74.8
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.6e-52 208.4 140 74.3
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 6.2e-52 207.6 138 76.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.2e-52 207.6 138 77.5
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 8.1e-52 207.2 141 72.3
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.1e-51 206.8 135 76.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.1e-51 206.8 141 74.5
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.4e-51 206.5 141 73.0
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.4e-51 206.5 141 73.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.4e-51 206.5 141 74.5
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.8e-51 206.1 139 79.1
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.8e-51 206.1 141 74.5
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 73.6
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 73.6
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.4e-51 205.7 140 72.9
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.4e-51 205.7 141 75.9
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 3.1e-51 205.3 141 72.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 3.1e-51 205.3 141 72.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 5.3e-51 204.5 140 72.9
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 5.3e-51 204.5 140 73.6
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 5.3e-51 204.5 141 72.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 5.3e-51 204.5 141 74.5
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 6.9e-51 204.1 135 74.8
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.9e-51 204.1 141 73.8
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.2e-50 203.4 134 76.9
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.5e-50 203.0 137 74.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.5e-50 203.0 140 72.9
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.0e-50 202.6 141 73.0
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 72.1
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 73.6
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 72.9
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 72.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.0e-50 202.6 140 73.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 72.9
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 72.9
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.6e-50 202.2 140 72.9
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 71.4
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 3.4e-50 201.8 140 72.9
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.4e-50 201.8 141 70.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 4.5e-50 201.4 141 73.8
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 4.5e-50 201.4 139 72.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.8e-50 201.1 140 72.9
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.8e-50 201.1 140 72.9
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.6e-50 200.7 140 72.1
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.6e-50 200.7 140 72.1
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 7.6e-50 200.7 140 72.1
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-49 199.1 140 69.3
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.2e-49 199.1 137 73.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.8e-49 198.4 141 72.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-49 198.0 140 70.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-49 198.0 135 71.9
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-49 198.0 140 69.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.9e-49 198.0 141 70.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.4e-49 197.6 141 70.2
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 6.4e-49 197.6 137 73.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.4e-49 197.2 140 67.9
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.4e-48 196.4 135 72.6
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.9e-48 196.1 135 71.1
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-48 195.7 140 67.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.5e-48 194.5 167 64.1
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 9.3e-48 193.7 141 70.2
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 9.3e-48 193.7 141 69.5
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.6e-47 193.0 141 69.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-47 192.6 140 67.1
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.7e-47 192.2 141 70.9
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.6e-47 191.4 141 68.8
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 7.9e-47 190.7 150 66.0
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.0e-46 190.3 114 83.3
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-46 189.9 115 82.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.3e-46 189.9 141 68.1
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.3e-46 189.9 146 66.4
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.8e-46 189.5 141 68.8
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.3e-46 189.1 180 58.3
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.0e-46 188.7 117 81.2
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 3.0e-46 188.7 124 74.2
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.9e-46 188.3 114 82.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.5e-45 185.7 114 79.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.3e-45 184.9 177 58.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.6e-44 183.0 114 79.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.6e-44 183.0 190 54.2
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.8e-44 182.2 113 79.6
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.8e-44 182.2 113 79.6
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 3.7e-44 181.8 113 79.6
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 4.8e-44 181.4 114 78.1
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.0e-43 178.3 140 63.6
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.3e-43 177.9 114 77.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 9.0e-43 177.2 114 77.2
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 9.0e-43 177.2 114 77.2
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-42 176.0 140 62.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-42 176.0 114 77.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.6e-42 175.6 114 75.4
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.8e-42 174.5 134 67.9
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-41 173.7 140 62.1
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-41 173.3 114 75.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-41 172.6 114 75.4
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.9e-41 172.2 114 75.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 4.9e-41 171.4 114 74.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.5e-41 171.0 114 76.3
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.5e-40 169.1 138 65.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 4.2e-40 168.3 227 46.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-39 166.0 109 74.3
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.1e-39 166.0 109 74.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.6e-39 164.9 113 71.7
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.8e-38 162.9 139 55.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.3e-37 158.3 138 55.8
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.4e-35 153.3 140 53.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 4.1e-35 151.8 156 55.1
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 5.3e-35 151.4 136 52.2
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 2.6e-34 149.1 138 55.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.3e-33 146.7 87 83.9
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 5.0e-33 144.8 97 77.3
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.1e-31 139.4 93 75.3
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.6e-28 129.8 87 79.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 9.1e-27 124.0 200 40.0
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 5.0e-25 118.2 70 82.9
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 5.0e-25 118.2 131 51.9
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 4.2e-24 115.2 140 42.1
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-24 114.0 70 81.4
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 9.4e-24 114.0 70 81.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-23 112.8 70 80.0
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.1e-23 111.3 85 60.0
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.1e-21 107.1 64 82.8
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.5e-21 106.7 135 39.3
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 8.2e-20 100.9 77 62.3
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-19 100.1 64 78.1
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.5e-16 89.4 60 81.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.2e-16 88.6 57 71.9
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.5e-16 88.2 57 71.9
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.6e-15 86.7 60 80.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.1e-13 80.5 56 66.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 4.4e-13 78.6 104 39.4
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.7e-13 78.2 133 32.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.7e-12 76.6 53 71.7
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-09 66.6 48 70.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-09 66.6 48 70.8
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 6.5e-09 64.7 48 62.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.5e-09 64.7 50 64.0
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.7e-07 59.3 41 70.7


User provided reference genes

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