Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.9e-65 250.0 127 100.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 7.1e-39 164.1 128 68.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.1e-38 162.5 129 68.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 4.6e-38 161.4 123 70.7
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.0e-38 161.0 123 69.9
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.0e-38 161.0 123 69.9
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.0e-37 160.2 124 68.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.8e-37 159.5 124 66.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.8e-37 159.5 128 66.4
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.8e-37 159.5 123 69.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.9e-37 158.3 132 63.6
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.9e-37 158.3 128 65.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 3.9e-37 158.3 113 71.7
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 3.9e-37 158.3 116 70.7
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.9e-37 158.3 133 63.9
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 5.1e-37 157.9 125 69.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.1e-37 157.9 129 65.9
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.7e-37 157.5 134 64.9
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 8.7e-37 157.1 131 64.9
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 8.7e-37 157.1 123 68.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 8.7e-37 157.1 130 65.4
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 8.7e-37 157.1 130 65.4
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.7e-37 157.1 134 64.2
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-36 156.8 130 66.2
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.1e-36 156.8 135 64.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.1e-36 156.8 135 64.4
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.1e-36 156.8 132 68.9
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.5e-36 156.4 134 64.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.5e-36 156.4 128 67.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.5e-36 156.4 119 68.9
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.5e-36 156.4 130 67.7
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.5e-36 156.4 123 67.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.9e-36 156.0 120 68.3
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.9e-36 156.0 130 66.9
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-36 156.0 120 67.5
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.5e-36 155.6 123 69.9
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.3e-36 155.2 131 67.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 3.3e-36 155.2 134 63.4
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.3e-36 154.8 125 68.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.3e-36 154.8 134 64.9
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 4.3e-36 154.8 134 64.9
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 4.3e-36 154.8 124 67.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.6e-36 154.5 129 65.1
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 7.4e-36 154.1 134 64.2
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 7.4e-36 154.1 134 64.2
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 7.4e-36 154.1 134 64.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 7.4e-36 154.1 127 64.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 7.4e-36 154.1 117 68.4
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 7.4e-36 154.1 132 63.6
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.6e-36 153.7 123 68.3
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.6e-36 153.7 112 70.5
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 9.6e-36 153.7 119 67.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.6e-36 153.7 118 68.6
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.3e-35 153.3 134 63.4
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.3e-35 153.3 135 63.7
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.3e-35 153.3 135 63.7
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-35 152.9 125 66.4
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.6e-35 152.9 125 66.4
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.6e-35 152.9 121 66.9
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.6e-35 152.9 117 71.8
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.6e-35 152.9 128 62.5
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.1e-35 152.5 115 69.6
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 2.8e-35 152.1 114 71.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.8e-35 152.1 115 69.6
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.8e-35 152.1 94 78.7
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.8e-35 152.1 113 70.8
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.8e-35 152.1 125 64.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 3.7e-35 151.8 127 63.8
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.8e-35 151.4 132 64.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.8e-35 151.4 127 65.4
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.8e-35 151.4 108 73.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 6.2e-35 151.0 129 63.6
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.2e-35 151.0 118 68.6
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.2e-35 151.0 118 68.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.2e-35 151.0 118 70.3
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 8.1e-35 150.6 117 70.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-34 150.2 132 65.9
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-34 150.2 132 65.9
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.1e-34 150.2 93 80.6
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.4e-34 149.8 112 70.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.4e-34 149.8 114 67.5
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.4e-34 149.8 87 86.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-34 149.4 123 67.5
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-34 149.4 133 64.7
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-34 149.4 131 64.1
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.8e-34 149.4 123 65.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.8e-34 149.4 116 67.2
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.8e-34 149.4 132 63.6
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.4e-34 149.1 106 72.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.4e-34 149.1 108 72.2
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 3.1e-34 148.7 128 61.7
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.1e-34 148.7 87 86.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.1e-34 148.7 127 66.1
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 4.0e-34 148.3 119 65.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 4.0e-34 148.3 119 65.5
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.0e-34 148.3 128 61.7
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.3e-34 147.9 112 68.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 5.3e-34 147.9 119 68.1
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.3e-34 147.9 94 78.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 5.3e-34 147.9 87 83.9
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 5.3e-34 147.9 111 69.4
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.0e-34 147.1 115 70.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 9.0e-34 147.1 120 65.8
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 9.0e-34 147.1 96 77.1
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.2e-33 146.7 87 83.9
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-33 146.7 116 66.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-33 146.7 132 62.1
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-33 146.7 132 62.1
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.5e-33 146.4 133 61.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 2.0e-33 146.0 115 67.0
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.0e-33 146.0 120 62.5
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.0e-33 146.0 114 67.5
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 106 72.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 3.4e-33 145.2 131 60.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.8e-33 144.4 131 60.3
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.8e-33 144.4 115 66.1
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.8e-33 144.4 106 71.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 7.6e-33 144.1 96 75.0
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 7.6e-33 144.1 96 75.0
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 7.6e-33 144.1 123 65.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.3e-32 143.3 83 83.1
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.7e-32 142.9 133 57.9
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 8.4e-32 140.6 111 68.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.1e-31 140.2 128 59.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.4e-31 139.8 83 83.1
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.9e-31 139.4 83 81.9
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.5e-31 137.9 131 61.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.2e-30 136.7 87 77.0
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.7e-30 135.6 87 77.0
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.7e-30 135.6 130 59.2
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.9e-29 131.7 125 62.4
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.7e-29 130.6 83 79.5
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.7e-29 130.6 128 61.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.1e-27 125.9 76 78.9
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.8e-27 124.8 83 77.1
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 6.9e-26 120.9 129 51.2
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.5e-25 118.2 114 56.1
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.9e-24 114.8 93 64.5
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-23 113.6 69 84.1
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.5e-22 108.6 78 73.1
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.8e-19 99.0 89 60.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 6.3e-19 97.8 56 80.4
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-18 97.1 93 57.0
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.8e-18 96.3 67 65.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.4e-18 95.9 127 48.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.9e-18 94.4 63 73.0
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 5.9e-17 91.3 133 48.9
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 8.5e-16 87.4 46 93.5
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 8.5e-16 87.4 87 54.0
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.1e-15 87.0 73 64.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-15 85.9 79 60.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.8e-13 79.7 50 78.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.0e-13 79.0 54 70.4
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 6.3e-11 71.2 44 68.2


User provided reference genes

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