Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.6e-225 783.5 392 100.0
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.2e-174 616.7 461 73.1
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.5e-143 512.7 469 59.1
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 4.7e-142 508.4 461 60.3
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.4e-141 506.9 461 59.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.1e-141 505.8 457 60.6
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 5.2e-141 505.0 461 59.9
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-140 503.8 456 59.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.5e-140 503.4 457 60.8
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.6e-140 502.7 456 59.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 3.4e-140 502.3 464 59.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.4e-140 502.3 456 59.4
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.7e-139 500.0 459 59.5
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.7e-139 500.0 465 58.5
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.2e-139 499.6 465 58.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.4e-139 498.0 465 59.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 8.4e-139 497.7 463 59.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.1e-138 497.3 461 59.0
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.1e-138 497.3 467 59.1
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.9e-138 496.5 461 59.4
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.1e-138 494.6 465 58.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 9.3e-138 494.2 456 59.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.6e-137 493.4 453 60.7
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.6e-137 493.4 457 58.4
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.1e-137 493.0 468 58.5
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.6e-137 491.9 465 58.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.3e-136 490.3 456 58.6
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.7e-136 490.0 467 58.9
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.7e-136 490.0 465 58.1
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.3e-136 489.6 465 56.8
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 3.0e-136 489.2 457 58.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.0e-136 489.2 457 58.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.0e-136 489.2 457 58.4
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.9e-136 488.8 464 57.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 6.6e-136 488.0 457 57.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-135 487.3 466 57.5
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.9e-135 486.5 469 56.9
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.9e-135 486.5 457 58.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.9e-135 486.5 459 59.0
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.3e-135 485.3 457 58.4
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.3e-135 485.3 457 57.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 7.3e-135 484.6 457 58.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.3e-135 484.6 457 58.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 7.3e-135 484.6 462 57.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 9.6e-135 484.2 457 58.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.3e-134 483.8 459 58.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.3e-134 483.8 461 57.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.1e-134 483.0 461 57.9
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-134 483.0 461 57.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.6e-134 482.3 457 58.0
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.1e-133 480.7 458 57.2
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.8e-133 479.9 461 57.7
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.8e-133 479.9 458 57.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.4e-133 479.6 465 57.2
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.4e-133 479.6 469 56.7
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.4e-133 479.6 456 57.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.1e-133 479.2 460 57.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 3.1e-133 479.2 458 57.0
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.0e-133 478.8 458 57.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.3e-133 478.4 465 57.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 9.0e-133 477.6 465 57.0
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.0e-133 477.6 457 57.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.5e-132 476.9 457 57.5
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.0e-132 476.5 459 56.6
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.5e-132 475.3 469 56.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 4.5e-132 475.3 459 57.7
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 5.8e-132 474.9 457 57.3
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 5.8e-132 474.9 457 58.0
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 5.8e-132 474.9 455 58.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 7.6e-132 474.6 458 56.6
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.7e-131 473.4 459 57.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.2e-131 473.0 458 56.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-130 470.7 468 56.2
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-130 470.3 465 55.5
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.4e-130 470.3 458 56.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.4e-130 468.4 457 56.9
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 5.4e-130 468.4 457 57.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.1e-130 468.0 464 56.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.7e-129 466.1 455 57.4
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.6e-129 465.3 460 56.1
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 7.9e-129 464.5 455 56.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 7.9e-129 464.5 457 56.0
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.3e-128 463.8 458 55.7
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-128 463.8 459 56.0
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 8.7e-128 461.1 463 55.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 4.3e-127 458.8 467 56.3
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 5.6e-127 458.4 463 55.9
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 7.4e-127 458.0 463 55.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 7.4e-127 458.0 467 56.3
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 7.4e-127 458.0 459 56.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.3e-126 457.2 463 55.5
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.1e-126 456.4 459 55.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.1e-126 456.4 476 54.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.1e-126 454.5 461 55.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.1e-126 454.5 461 55.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.4e-125 453.8 460 55.4
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.0e-125 452.2 457 54.9
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.3e-125 451.8 458 54.6
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.0e-124 449.9 456 55.3
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.0e-124 449.9 455 55.2
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.6e-124 449.5 460 54.6
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.4e-124 449.1 460 54.8
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.9e-124 447.6 463 54.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.3e-123 447.2 457 54.5
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.7e-123 446.8 530 50.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.8e-123 445.7 459 53.8
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.9e-123 445.3 463 53.6
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 6.4e-123 444.9 459 53.8
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 8.4e-123 444.5 461 52.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-122 443.4 459 53.6
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.4e-122 443.0 467 53.7
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.2e-122 442.2 458 53.1
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.2e-122 442.2 459 54.0
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 7.1e-122 441.4 459 53.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 7.1e-122 441.4 459 53.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.1e-121 439.9 443 55.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.1e-121 439.9 463 53.8
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.0e-120 437.6 456 51.8
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.0e-120 436.0 458 53.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 1.9e-119 433.3 463 52.5
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 9.6e-119 431.0 460 52.6
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.8e-118 428.7 464 52.8
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 6.2e-118 428.3 419 57.0
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.8e-117 426.8 478 51.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-116 424.1 407 56.3
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-115 420.6 462 52.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.9e-115 419.5 436 55.7
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.2e-114 416.0 464 52.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.5e-114 415.2 411 56.4
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.7e-111 405.2 403 56.1
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.4e-108 396.0 473 50.5
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.9e-108 395.2 407 54.3
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-107 394.4 472 50.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.2e-106 389.0 460 49.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.6e-105 387.1 412 52.9
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.1e-105 386.7 464 50.4
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.6e-105 386.0 469 49.9
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.0e-104 384.4 459 50.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 5.1e-104 382.1 474 49.4
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.4e-101 373.2 443 50.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 2.0e-100 370.2 384 53.6
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.7e-100 368.2 469 48.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.8e-99 365.9 472 47.7
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.2e-97 360.9 464 44.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.0e-95 353.6 461 44.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.7e-94 349.4 457 47.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.5e-92 344.0 245 72.7
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.1e-89 332.0 408 48.8
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 6.3e-86 322.0 460 43.9
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.6e-84 316.6 203 76.4
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.9e-83 313.2 204 75.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 4.4e-79 299.3 196 73.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.7e-76 290.0 474 42.0
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.0e-65 251.9 157 77.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.1e-36 157.5 166 51.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.9e-35 153.3 168 50.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.5e-34 150.6 168 49.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 9.5e-34 148.7 123 59.3
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.2e-33 148.3 168 49.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 8.7e-19 99.0 81 67.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 8.1e-17 92.4 60 76.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.0e-16 90.1 134 36.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.8e-15 86.3 115 42.6
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-14 85.1 109 40.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.1e-13 79.3 92 45.7
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.3e-13 79.0 86 44.2
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.3e-11 75.1 115 36.5


User provided reference genes

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