Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.9e-35 151.0 80 100.0
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 5.9e-31 137.1 81 92.6
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.1e-18 96.3 83 68.7
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 6.3e-17 90.5 80 67.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.3e-17 90.5 80 65.0
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-16 89.7 80 66.2
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-16 89.4 80 63.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 1.8e-16 89.0 80 65.0
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.1e-16 86.7 80 62.5
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 9.1e-16 86.7 80 63.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 9.1e-16 86.7 81 66.7
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-15 86.3 80 63.8
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-15 86.3 80 65.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.2e-15 86.3 80 63.8
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.6e-15 85.9 81 66.7
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.6e-15 85.9 81 66.7
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-15 85.9 80 65.0
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.0e-15 85.5 80 63.8
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 2.6e-15 85.1 81 66.7
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.6e-15 85.1 83 63.9
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.6e-15 85.1 80 62.5
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 3.5e-15 84.7 80 65.0
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.5e-15 84.3 80 63.8
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 4.5e-15 84.3 80 62.5
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.7e-15 83.6 80 53.8
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.0e-14 83.2 81 65.4
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 1.0e-14 83.2 80 67.5
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.0e-14 83.2 80 62.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.0e-14 83.2 78 62.8
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.3e-14 82.8 82 65.9
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.3e-14 82.8 80 62.5
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.3e-14 82.8 80 62.5
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.7e-14 82.4 82 59.8
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.7e-14 82.4 79 63.3
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.2e-14 82.0 80 60.0
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.9e-14 81.6 80 63.8
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 2.9e-14 81.6 79 57.0
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 2.9e-14 81.6 82 64.6
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.9e-14 81.6 80 61.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.5e-14 80.5 80 60.0
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 8.5e-14 80.1 81 59.3
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 8.5e-14 80.1 80 63.8
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 8.5e-14 80.1 82 63.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 1.1e-13 79.7 80 62.5
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.5e-13 79.3 80 60.0
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.5e-13 79.3 81 65.4
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 1.5e-13 79.3 85 62.4
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.9e-13 79.0 82 62.2
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.9e-13 79.0 80 63.8
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 3.2e-13 78.2 80 62.5
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 3.2e-13 78.2 80 62.5
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.2e-13 78.2 80 61.2
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.2e-13 77.8 84 59.5
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 7.2e-13 77.0 77 61.0
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 9.4e-13 76.6 82 64.6
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 9.4e-13 76.6 82 64.6
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 9.4e-13 76.6 82 64.6
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 9.4e-13 76.6 80 60.0
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 1.2e-12 76.3 80 63.8
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 1.6e-12 75.9 82 64.6
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.6e-12 75.9 81 56.8
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-12 75.5 82 64.6
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-12 75.5 82 64.6
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 2.1e-12 75.5 81 59.3
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 2.7e-12 75.1 82 63.4
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.7e-12 75.1 80 58.8
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 3.6e-12 74.7 80 60.0
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 3.6e-12 74.7 82 61.0
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.6e-12 74.7 82 61.0
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.6e-12 74.7 82 63.4
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 4.7e-12 74.3 77 59.7
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 6.1e-12 73.9 83 59.0
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 6.1e-12 73.9 80 58.8
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 8.0e-12 73.6 80 56.2
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.0e-11 73.2 80 58.8
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 1.0e-11 73.2 81 63.0
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.4e-11 72.8 82 61.0
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 1.4e-11 72.8 81 63.0
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-11 72.4 82 48.8
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.8e-11 72.4 82 48.8
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.8e-11 72.4 82 48.8
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 2.3e-11 72.0 82 48.8
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 2.3e-11 72.0 79 64.6
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 2.3e-11 72.0 82 48.8
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.3e-11 72.0 83 59.0
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 59.3
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 4.0e-11 71.2 81 65.4
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 4.0e-11 71.2 82 57.3
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 4.0e-11 71.2 82 52.4
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.0e-11 71.2 82 47.6
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 4.0e-11 71.2 80 53.8
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 5.2e-11 70.9 83 45.8
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.2e-11 70.9 78 53.8
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 5.2e-11 70.9 82 62.2
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 6.7e-11 70.5 81 56.8
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 6.7e-11 70.5 82 47.6
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 6.7e-11 70.5 82 47.6
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 6.7e-11 70.5 82 47.6
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 6.7e-11 70.5 82 47.6
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 6.7e-11 70.5 79 59.5
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 6.7e-11 70.5 84 47.6
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 8.8e-11 70.1 82 58.5
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 8.8e-11 70.1 82 59.8
CDE04G3517 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 8.8e-11 70.1 78 60.3
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 8.8e-11 70.1 82 59.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 8.8e-11 70.1 82 59.8
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 1.1e-10 69.7 83 56.6
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 1.1e-10 69.7 81 58.0
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-10 69.7 74 45.9
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.1e-10 69.7 80 58.8
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 59.3
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 62.2
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.5e-10 69.3 80 57.5
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 57.3
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 59.8
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.5e-10 69.3 82 58.5
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 2.0e-10 68.9 80 57.5
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 2.0e-10 68.9 79 55.7
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 2.6e-10 68.6 82 47.6
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.6e-10 68.6 82 46.3
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 58.0
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 3.3e-10 68.2 78 57.7
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.3e-10 68.2 78 52.6
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 50.6
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.4e-10 67.8 80 43.8
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 4.4e-10 67.8 81 56.8
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 4.4e-10 67.8 80 53.8
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 4.4e-10 67.8 84 42.9
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 5.7e-10 67.4 82 61.0
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 5.7e-10 67.4 82 61.0
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 5.7e-10 67.4 82 61.0
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 5.7e-10 67.4 78 60.3
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 7.5e-10 67.0 81 58.0
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 7.5e-10 67.0 83 56.6
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 1.3e-09 66.2 80 62.5
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 1.7e-09 65.9 81 60.5
unitig_744.g24657 Utricularia gibba HOM05D002160 ORTHO05D002012 1.7e-09 65.9 80 52.5
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.8e-09 65.1 102 52.0
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 2.8e-09 65.1 80 53.8
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 3.7e-09 64.7 56 50.0
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 3.7e-09 64.7 83 43.4
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 6.3e-09 63.9 68 66.2
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 8.2e-09 63.5 81 45.7
SEGI_27338 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 55.0
SEGI_31010 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 55.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 1.4e-08 62.8 56 50.0
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-08 62.4 79 41.8
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.8e-08 62.4 82 56.1
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.1e-08 61.6 82 52.4
SEGI_28651 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 3.1e-08 61.6 80 53.8
Psat7g239160 Pisum sativum HOM05D002160 ORTHO05D002012 5.3e-08 60.8 57 45.6
Hund10660 Selenicereus undatus HOM05D002160 ORTHO05D002012 5.3e-08 60.8 59 50.8
SEGI_27294 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 7.0e-08 60.5 81 54.3
SEGI_32259 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 7.0e-08 60.5 81 56.8
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 42.5
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 9.1e-08 60.1 82 46.3
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 55.0
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 51.2
SHI12670 Sapria himalayana HOM05D002160 ORTHO05D002012 9.1e-08 60.1 80 53.8
HanXRQChr08g0227151 Helianthus annuus HOM05D002160 ORTHO05D002012 1.6e-07 59.3 79 40.5
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 1.6e-07 59.3 56 46.4
Ca_03759_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 2.0e-07 58.9 46 54.3
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 2.0e-07 58.9 56 46.4
Medtr4g021725 Medicago truncatula HOM05D002160 ORTHO05D002012 2.7e-07 58.5 53 45.3
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 40.5
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.5e-07 57.8 94 46.8
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 4.5e-07 57.8 84 39.3
Ca_03760_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 5.9e-07 57.4 48 52.1
Medtr4g021730 Medicago truncatula HOM05D002160 ORTHO05D002012 5.9e-07 57.4 74 48.6
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 1.3e-06 56.2 79 39.2
Lalb_Chr12g0210241 Lupinus albus HOM05D002160 ORTHO05D002012 1.3e-06 56.2 45 48.9
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 1.3e-06 56.2 58 51.7
PGR102G1600 Punica granatum HOM05D002160 ORTHO05D002012 2.9e-06 55.1 80 47.5
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 2.9e-06 55.1 59 47.5
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 3.8e-06 54.7 45 46.7
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 3.8e-06 54.7 83 51.8
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.8e-06 54.7 57 49.1
Glyma.17G230500 Glycine max HOM05D002160 ORTHO05D002012 5.0e-06 54.3 74 47.3
TPR.G5610 Trifolium pratense HOM05D002160 ORTHO05D002012 5.0e-06 54.3 55 41.8
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 6.5e-06 53.9 83 50.6


User provided reference genes

Program Settings