Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.5e-198 696.0 374 100.0
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.6e-94 349.0 379 55.4
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 4.7e-91 339.0 381 53.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 2.2e-88 330.1 381 53.3
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 8.4e-88 328.2 382 53.1
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.1e-87 327.8 379 52.2
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.4e-87 327.4 379 53.6
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.9e-87 327.0 376 52.7
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.2e-87 325.9 387 51.9
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.2e-86 324.3 379 51.2
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.5e-86 322.8 380 52.9
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.5e-86 322.8 380 52.9
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 4.6e-86 322.4 379 50.7
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 7.8e-86 321.6 383 52.2
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.0e-85 321.2 382 51.0
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.7e-85 320.5 382 51.0
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.3e-85 320.1 379 53.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 6.6e-85 318.5 381 52.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 8.7e-85 318.2 387 51.4
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.5e-84 316.6 379 51.5
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 5.6e-84 315.5 382 51.0
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 5.6e-84 315.5 383 50.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 5.6e-84 315.5 382 51.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.3e-83 314.3 382 51.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.8e-83 313.2 381 51.2
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.6e-83 312.8 383 51.7
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 4.8e-83 312.4 379 52.2
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.1e-83 311.6 378 51.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.1e-82 311.2 381 50.7
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.4e-82 310.8 381 50.1
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.4e-82 310.1 377 51.2
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.1e-82 309.7 376 50.5
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.2e-81 307.8 379 51.5
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.0e-81 307.0 390 49.5
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 3.4e-81 306.2 381 50.9
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 4.5e-81 305.8 381 50.1
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 2.2e-80 303.5 377 50.7
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.9e-80 303.1 378 51.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.9e-80 302.4 377 50.9
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 8.4e-80 301.6 375 50.1
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.9e-79 300.4 381 49.6
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 2.4e-79 300.1 380 50.8
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.2e-79 299.7 382 49.2
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.2e-79 299.7 382 50.0
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.2e-79 299.7 378 48.7
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 7.1e-79 298.5 382 49.7
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.2e-78 297.7 379 49.6
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.2e-78 297.7 383 48.6
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.5e-78 296.2 376 48.9
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 8.7e-77 291.6 379 48.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.5e-76 290.8 363 49.6
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.9e-76 290.4 376 48.7
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.5e-76 290.0 386 49.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.6e-76 288.9 361 48.2
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.3e-75 287.7 391 48.6
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.8e-75 285.8 378 47.9
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.4e-74 284.3 381 47.5
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.8e-74 283.9 381 47.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 1.8e-74 283.9 370 48.9
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.8e-74 283.9 380 49.2
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.4e-74 283.5 376 46.8
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.4e-74 283.5 372 49.2
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 5.3e-74 282.3 376 46.8
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 5.3e-74 282.3 387 47.5
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 6.9e-74 282.0 376 48.4
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 9.0e-74 281.6 379 48.0
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 9.0e-74 281.6 379 48.0
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.5e-73 280.8 381 45.7
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.0e-73 280.4 440 42.3
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.6e-73 280.0 381 47.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 3.4e-73 279.6 379 47.8
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.5e-73 279.3 392 48.5
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 5.8e-73 278.9 383 49.1
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.3e-72 277.7 377 47.7
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.3e-72 277.7 378 48.9
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.4e-71 274.2 379 46.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.9e-71 273.9 377 44.3
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 3.2e-71 273.1 318 50.6
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 4.2e-71 272.7 377 48.0
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.5e-71 272.3 377 47.5
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.2e-70 271.2 382 47.4
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.2e-70 271.2 382 47.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.5e-70 269.6 379 47.2
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.5e-70 269.6 379 47.2
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 4.6e-70 269.2 384 45.1
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 8.7e-69 265.0 383 46.0
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 4.3e-68 262.7 378 46.0
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 9.6e-68 261.5 382 44.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.8e-67 260.0 323 48.3
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 3.1e-66 256.5 437 41.9
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 4.0e-66 256.1 364 44.2
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.0e-65 253.8 403 43.7
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 5.8e-65 252.3 378 45.0
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.9e-63 247.3 383 46.0
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.1e-62 243.8 375 43.7
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 3.7e-59 233.0 379 43.8
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.4e-57 226.5 282 50.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.2e-56 223.8 358 39.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.5e-49 201.1 380 40.3
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 4.2e-47 193.0 262 46.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 4.7e-46 189.5 143 68.5
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.0e-45 188.3 211 53.6
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.1e-45 186.0 145 66.2
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 7.7e-41 172.2 255 44.7
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 5.2e-37 159.5 133 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 3.3e-36 156.8 322 35.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 3.7e-35 153.3 344 36.3
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.8e-32 143.3 194 47.4
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.2e-30 138.3 265 38.5
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.1e-30 137.5 397 32.7
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.4e-29 134.8 98 67.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.4e-28 129.8 226 41.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 4.4e-28 129.8 114 59.6
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.3e-27 128.3 231 39.4
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-26 125.2 332 31.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 8.5e-24 115.5 261 35.2
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 4.7e-22 109.8 265 32.5
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.4e-21 108.2 396 29.5
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 9.8e-20 102.1 206 38.8
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-18 98.6 332 28.3
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.0e-17 94.4 92 53.3
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.1e-14 82.8 97 46.4
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.4e-13 81.6 234 32.1
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 8.9e-13 79.0 101 48.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 8.9e-13 79.0 68 60.3
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-10 72.0 162 35.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 3.2e-10 70.5 75 53.3
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.7e-08 64.7 47 70.2
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 5.6e-07 59.7 123 38.2


User provided reference genes

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