Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 0.0e+00 1994.9 1017 100.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1145.2 1002 58.6
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1111.7 1019 56.8
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1095.1 1019 55.9
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 2.4e-310 1068.9 1024 55.1
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 3.1e-310 1068.5 1036 54.9
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 2.6e-309 1065.4 1027 54.2
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 3.4e-309 1065.1 1063 53.0
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1026 55.6
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 1.1e-307 1060.1 1022 55.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 2.1e-306 1055.8 1036 53.5
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 1.3e-305 1053.1 1000 55.1
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 2.5e-304 1048.9 1017 54.6
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 4.3e-304 1048.1 1027 53.6
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 1.6e-303 1046.2 1027 54.4
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 1.6e-303 1046.2 1027 53.7
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 2.1e-303 1045.8 1025 54.0
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 3.1e-302 1042.0 1022 54.3
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 9.0e-302 1040.4 1014 53.9
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 4.5e-301 1038.1 1027 53.3
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 9.9e-301 1036.9 1031 53.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 2.9e-300 1035.4 1016 53.3
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 8.4e-300 1033.9 1016 53.1
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.9e-299 1032.7 1036 53.3
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 2.4e-299 1032.3 1028 54.4
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 4.2e-299 1031.6 1032 53.4
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 1.6e-298 1029.6 1026 54.5
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 2.7e-298 1028.9 1032 53.4
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.0e-297 1026.9 1031 54.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 1.8e-297 1026.2 1023 53.5
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 8.7e-297 1023.8 1016 52.9
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 8.7e-297 1023.8 1032 52.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.1e-296 1023.5 1028 53.5
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 3.3e-296 1021.9 1022 53.9
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 1.3e-295 1020.0 1021 53.5
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 8.2e-295 1017.3 1022 54.1
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 9.0e-294 1013.8 1006 54.0
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 3.4e-293 1011.9 1044 51.7
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 8.4e-292 1007.3 1016 53.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 1.9e-291 1006.1 1029 52.6
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 6.0e-290 1001.1 1022 53.0
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 2.3e-289 999.2 1009 52.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 3.9e-289 998.4 1056 52.4
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 8.7e-289 997.3 1026 53.3
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 1.1e-288 996.9 1028 52.4
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 2.2e-284 982.6 1022 51.4
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 8.5e-284 980.7 1036 51.4
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 5.5e-283 978.0 991 52.8
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.6e-282 975.3 1034 50.7
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 6.1e-282 974.5 1042 50.4
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.0e-281 973.8 1025 51.1
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 1.0e-281 973.8 996 51.9
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 1.4e-281 973.4 1014 50.7
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 3.0e-281 972.2 1033 50.1
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 5.1e-281 971.5 1023 51.2
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 3.7e-279 965.3 1063 49.8
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 3.7e-279 965.3 1016 51.4
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 6.9e-278 961.1 1024 50.7
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 1.7e-276 956.4 1038 50.3
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.5e-275 952.6 1055 49.5
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 5.5e-275 951.4 1015 51.3
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 9.4e-275 950.7 993 51.7
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 6.1e-274 948.0 1032 50.3
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 7.9e-274 947.6 1031 50.3
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 2.3e-273 946.0 1013 51.0
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.1e-273 944.9 1016 49.6
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 5.1e-273 944.9 1028 48.6
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 2.0e-272 943.0 1032 49.9
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 3.7e-271 938.7 1000 50.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 9.1e-270 934.1 1002 51.4
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 1.3e-268 930.2 912 54.5
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 6.5e-268 927.9 1032 49.4
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.9e-267 926.4 1001 51.7
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 5.5e-267 924.9 1007 51.0
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 5.5e-267 924.9 965 52.0
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 2.1e-266 922.9 1034 48.7
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 6.1e-266 921.4 1038 48.7
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 8.2e-263 911.0 1029 48.6
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 2.4e-262 909.4 1030 48.4
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 4.1e-262 908.7 1030 48.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.1e-262 908.7 1037 48.3
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 9.7e-256 887.5 1050 47.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 7.0e-254 881.3 1036 49.0
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 2.7e-253 879.4 1028 48.1
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.9e-253 878.2 1050 48.5
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 7.7e-253 877.9 822 55.4
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 5.0e-252 875.2 906 51.8
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.0e-240 836.6 1038 47.4
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.4e-240 835.9 1000 46.0
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.8e-238 830.1 968 49.0
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.1e-230 804.3 774 55.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 5.2e-225 785.4 732 56.6
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 3.2e-206 723.0 1037 42.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.0e-201 706.1 659 58.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.6e-200 703.4 659 58.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 2.9e-159 567.0 989 36.0
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 3.9e-156 556.6 692 46.2
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.7e-151 541.2 647 49.0
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.5e-150 537.3 598 48.0
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.7e-143 514.6 1004 35.1
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.3e-138 498.4 553 50.8
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.3e-135 488.4 534 51.3
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 5.7e-131 473.0 905 34.5
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 4.1e-121 440.3 347 64.3
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.2e-101 373.2 1117 29.4
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 2.7e-96 357.8 1125 28.7
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.7e-79 302.0 319 51.7
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.5e-78 298.1 443 36.1
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 2.0e-75 288.5 389 41.4
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-57 228.8 359 35.4
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 5.5e-57 227.3 224 51.3
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-45 189.5 269 40.5
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.8e-44 185.7 142 64.8
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 5.3e-36 157.5 564 28.9
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 4.5e-35 154.5 162 53.1
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.1e-32 145.6 224 38.4
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 5.2e-31 141.0 198 35.4
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 4.4e-30 137.9 234 38.5
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.8e-23 113.6 103 57.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 1.5e-22 112.8 426 26.8
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.7e-21 108.2 84 57.1
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.7e-19 102.1 128 43.0
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-18 100.1 73 58.9
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.0e-18 97.8 80 53.8
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 6.5e-18 97.4 172 36.6
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 7.2e-17 94.0 77 48.1
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.6e-16 92.8 160 35.6
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.0e-15 90.1 223 34.5
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.7e-13 82.8 229 28.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.9e-13 81.3 102 47.1
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.4e-12 79.0 50 68.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.6e-08 66.2 60 46.7
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.6e-08 66.2 60 46.7
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.6e-08 65.1 147 36.1
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 8.0e-08 63.9 63 47.6
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 5.2e-07 61.2 49 61.2
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 8.9e-07 60.5 63 46.0
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 5.7e-06 57.8 33 75.8
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 7.5e-06 57.4 367 22.6


User provided reference genes

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