Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 4.1e-72 275.8 314 100.0
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 8.1e-60 235.0 311 66.9
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.4e-59 234.2 311 72.3
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 9.9e-58 228.0 312 64.1
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 1.3e-57 227.6 311 67.5
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 2.9e-57 226.5 310 80.0
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.8e-57 226.1 311 64.3
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 4.9e-57 225.7 310 41.6
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 8.4e-57 224.9 315 62.9
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.1e-56 224.6 311 67.2
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 1.1e-56 224.6 311 71.7
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 1.4e-56 224.2 309 67.3
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 1.9e-56 223.8 312 73.1
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 4.2e-56 222.6 311 72.7
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 5.4e-56 222.2 311 65.9
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 9.3e-56 221.5 312 70.8
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 1.6e-55 220.7 309 66.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 1.6e-55 220.7 310 72.9
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.6e-55 220.7 311 89.7
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 1.6e-55 220.7 311 71.1
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 2.1e-55 220.3 311 70.1
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 2.7e-55 219.9 311 88.7
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 4.6e-55 219.2 311 68.8
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 4.6e-55 219.2 310 90.3
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 4.6e-55 219.2 311 72.3
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 6.0e-55 218.8 311 70.1
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 6.0e-55 218.8 311 88.4
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 7.9e-55 218.4 309 71.8
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 7.9e-55 218.4 311 63.3
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.3e-54 217.6 311 88.4
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.3e-54 217.6 309 72.8
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.7e-54 217.2 310 63.5
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 2.3e-54 216.9 311 63.0
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 2.3e-54 216.9 314 64.6
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 2.3e-54 216.9 310 90.0
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.9e-54 216.1 309 71.2
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 6.6e-54 215.3 311 70.7
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 6.6e-54 215.3 309 72.5
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 6.6e-54 215.3 311 65.9
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.9e-53 213.8 322 51.2
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.5e-53 213.4 315 38.7
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.5e-53 213.4 327 37.9
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.3e-53 213.0 309 50.2
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 5.6e-53 212.2 314 63.7
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.3e-52 211.1 311 67.5
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 1.3e-52 211.1 312 62.5
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 2.1e-52 210.3 311 61.7
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 2.1e-52 210.3 311 63.0
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 2.1e-52 210.3 311 69.8
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 4.8e-52 209.1 312 84.9
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 4.8e-52 209.1 311 61.4
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 8.1e-52 208.4 309 61.5
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 8.1e-52 208.4 309 51.8
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 1.4e-51 207.6 309 60.8
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.8e-51 207.2 336 50.0
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.2e-50 204.5 307 51.1
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 3.4e-50 203.0 307 61.9
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 4.5e-50 202.6 312 37.2
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 7.6e-50 201.8 309 71.8
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 7.6e-50 201.8 309 60.5
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 1.3e-49 201.1 311 60.1
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 2.9e-49 199.9 309 69.3
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 4.9e-49 199.1 306 61.4
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 4.9e-49 199.1 313 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 6.4e-49 198.7 308 80.5
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 1.4e-48 197.6 311 60.8
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 1.4e-48 197.6 309 71.2
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 1.9e-48 197.2 311 47.3
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 1.9e-48 197.2 309 70.2
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 4.2e-48 196.1 304 64.1
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 5.5e-48 195.7 312 78.2
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 7.1e-48 195.3 309 58.3
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 7.1e-48 195.3 309 86.1
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 7.1e-48 195.3 309 86.7
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 9.3e-48 194.9 309 70.6
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 1.6e-47 194.1 93 96.8
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 1.6e-47 194.1 311 61.7
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.1e-47 193.7 309 69.9
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.1e-47 193.7 311 65.6
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 2.1e-47 193.7 311 77.8
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.7e-47 193.4 308 70.8
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 2.7e-47 193.4 310 60.6
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 7.9e-47 191.8 311 62.4
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 1.0e-46 191.4 308 84.1
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.3e-46 191.0 312 67.3
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.3e-46 191.0 361 33.8
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 2.3e-46 190.3 310 60.6
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 1.5e-45 187.6 291 46.0
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 4.3e-45 186.0 312 62.8
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.6e-44 184.1 311 64.6
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 3.7e-44 183.0 284 72.9
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 8.1e-44 181.8 312 35.6
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 1.1e-43 181.4 317 49.8
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 3.1e-43 179.9 311 34.7
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 6.9e-43 178.7 312 58.3
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 6.9e-43 178.7 311 59.5
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 2.0e-42 177.2 284 65.1
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 4.5e-42 176.0 284 88.4
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.5e-42 176.0 282 48.2
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.0e-41 174.9 311 56.9
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 1.0e-41 174.9 312 51.0
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.3e-41 174.5 281 48.4
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.3e-41 174.5 282 73.8
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.2e-41 173.7 320 34.1
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 2.9e-41 173.3 309 34.0
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.9e-41 173.3 344 32.8
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 3.8e-41 172.9 306 34.0
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 6.5e-41 172.2 284 71.5
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 8.4e-41 171.8 282 88.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.1e-40 171.4 93 80.6
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.4e-40 171.0 311 57.2
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 3.2e-40 169.9 288 35.8
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 4.2e-40 169.5 311 33.4
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 9.3e-40 168.3 309 67.6
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 9.3e-40 168.3 311 83.0
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 1.6e-39 167.5 93 76.3
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 2.7e-39 166.8 283 65.0
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.0e-38 164.9 93 76.3
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 1.0e-38 164.9 93 76.3
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 2.3e-38 163.7 310 63.5
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.3e-38 163.7 309 55.7
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.1e-37 161.4 410 29.5
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.1e-37 161.4 310 61.3
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.5e-37 161.0 318 32.1
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 1.5e-37 161.0 312 32.7
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.9e-37 160.6 320 34.4
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 2.5e-37 160.2 91 78.0
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 2.5e-37 160.2 283 71.4
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.5e-37 160.2 90 76.7
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.5e-37 160.2 90 76.7
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 9.6e-37 158.3 91 74.7
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 9.6e-37 158.3 91 74.7
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 9.6e-37 158.3 93 74.2
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.6e-36 157.5 300 33.7
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 3.7e-36 156.4 311 31.8
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.2e-36 155.2 93 74.2
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 1.4e-35 154.5 323 30.7
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 3.1e-35 153.3 312 31.7
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 9.0e-35 151.8 110 63.6
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 1.5e-34 151.0 90 72.2
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.6e-34 150.2 309 62.1
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 3.4e-34 149.8 94 70.2
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 3.4e-34 149.8 94 70.2
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 8.5e-33 145.2 264 48.9
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 3.2e-32 143.3 289 48.8
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 4.2e-32 142.9 93 69.9
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.1e-29 134.8 90 65.6
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.3e-28 129.0 92 65.2
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 6.3e-28 129.0 93 66.7
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 8.2e-28 128.6 76 69.7
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 8.2e-28 128.6 64 89.1
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 2.4e-27 127.1 65 86.2
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 3.4e-26 123.2 64 84.4
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 5.9e-26 122.5 65 83.1
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 2.2e-25 120.6 62 83.9
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 5.0e-25 119.4 62 83.9
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.5e-24 117.1 312 29.2
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 4.2e-24 116.3 64 79.7
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 2.1e-23 114.0 63 79.4
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 3.6e-23 113.2 69 69.6
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 7.9e-23 112.1 69 71.0
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 8.8e-22 108.6 53 88.7
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 2.6e-21 107.1 62 72.6
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 4.3e-21 106.3 91 56.0
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 1.3e-20 104.8 92 50.0
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 2.8e-20 103.6 93 55.9
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 3.7e-20 103.2 65 76.9
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 3.7e-20 103.2 64 71.9
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 6.3e-20 102.4 54 83.3
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 6.3e-20 102.4 93 50.5
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 1.2e-18 98.2 93 46.2
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 1.5e-18 97.8 86 51.2
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 2.5e-16 90.5 73 58.9
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.2e-15 88.2 101 45.5
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 2.1e-15 87.4 62 61.3
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 5.7e-13 79.3 94 39.4
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 4.1e-11 73.2 76 48.7
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 3.5e-10 70.1 58 55.2
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 3.8e-09 66.6 44 63.6
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 5.0e-09 66.2 41 63.4
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.1e-08 65.1 40 65.0
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.1e-07 60.8 30 86.7
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 2.1e-07 60.8 29 75.9
Medtr8g085230 Medicago truncatula HOM05D003773 ORTHO05D004377 1.4e-06 58.2 33 78.8
BcaB01g05424 Brassica carinata HOM05D000005 ORTHO05D000449 5.2e-06 56.2 28 82.1


User provided reference genes

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