Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2549 Ceratophyllum demersum HOM05D004830 ORTHO05D005310 1.6e-74 282.7 144 100.0
Potri.013G068900 Populus trichocarpa HOM05D004830 ORTHO05D005310 6.4e-20 101.3 127 49.6
CiPaw.09G053100 Carya illinoinensis HOM05D004830 ORTHO05D005310 7.8e-18 94.4 144 43.1
Duzib106G0998 Durio zibethinus HOM05D004830 ORTHO05D005310 3.0e-17 92.4 131 47.3
Gohir.A11G224212 Gossypium hirsutum HOM05D004830 ORTHO05D005310 5.1e-17 91.7 83 65.1
RcHm_v2.0_Chr3g0495501 Rosa chinensis HOM05D004830 ORTHO05D005310 6.6e-17 91.3 94 55.3
Manes.08G155600 Manihot esculenta HOM05D004830 ORTHO05D005310 8.7e-17 90.9 145 42.1
TAR633G1142 Trochodendron aralioides HOM05D004830 ORTHO05D005310 8.7e-17 90.9 161 38.5
PSO591G0293 Papaver somniferum HOM05D004830 ORTHO05D005310 1.1e-16 90.5 147 42.2
PSO832G0423 Papaver somniferum HOM05D004830 ORTHO05D005310 1.5e-16 90.1 147 41.5
Sabra13G0059800 Salix brachista HOM05D004830 ORTHO05D005310 1.5e-16 90.1 127 46.5
Ciclev10032343m.g Citrus clementina HOM05D004830 ORTHO05D005310 5.6e-16 88.2 87 56.3
TWI34G0970 Tripterygium wilfordii HOM05D004830 ORTHO05D005310 7.3e-16 87.8 87 58.6
COL.COLO4_33470 Corchorus olitorius HOM05D004830 ORTHO05D005310 1.6e-15 86.7 83 61.4
Gohir.D11G237500 Gossypium hirsutum HOM05D004830 ORTHO05D005310 1.6e-15 86.7 83 61.4
PGR042G2697 Punica granatum HOM05D004830 ORTHO05D005310 1.6e-15 86.7 149 38.3
Phvul.001G101700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 4.8e-15 85.1 135 43.7
GSVIVG01029897001 Vitis vinifera HOM05D004830 ORTHO05D005310 4.8e-15 85.1 149 41.6
MBI19_g47438_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 6.2e-15 84.7 140 42.9
FvH4_1g29410 Fragaria vesca HOM05D004830 ORTHO05D005310 1.1e-14 84.0 136 44.1
FAN19G2808 Fragaria x ananassa HOM05D004830 ORTHO05D005310 1.4e-14 83.6 136 44.1
Thecc.05G236700 Theobroma cacao HOM05D004830 ORTHO05D005310 1.4e-14 83.6 83 61.4
Glyma.19G121200 Glycine max HOM05D004830 ORTHO05D005310 3.1e-14 82.4 87 56.3
VMungo1383G2348 Vigna mungo HOM05D004830 ORTHO05D005310 3.1e-14 82.4 152 41.4
MSTRG.6264 Avicennia marina HOM05D004830 ORTHO05D005310 4.0e-14 82.0 91 53.8
Lj1g0023159 Lotus japonicus HOM05D004830 ORTHO05D005310 4.0e-14 82.0 84 59.5
Lalb_Chr22g0358351 Lupinus albus HOM05D004830 ORTHO05D005310 4.0e-14 82.0 86 55.8
MD14G1012800 Malus domestica HOM05D004830 ORTHO05D005310 4.0e-14 82.0 85 56.5
Nn7g37285 Nelumbo nucifera HOM05D004830 ORTHO05D005310 4.0e-14 82.0 105 47.6
TAR633G1657 Trochodendron aralioides HOM05D004830 ORTHO05D005310 5.3e-14 81.6 130 42.3
CANSAT78G0784 Cannabis sativa HOM05D004830 ORTHO05D005310 1.2e-13 80.5 95 52.6
Cpa.g.sc73.40 Carica papaya HOM05D004830 ORTHO05D005310 1.5e-13 80.1 77 62.3
Eucgr.A02163 Eucalyptus grandis HOM05D004830 ORTHO05D005310 2.0e-13 79.7 89 50.6
Psat3g084280 Pisum sativum HOM05D004830 ORTHO05D005310 4.5e-13 78.6 138 42.0
QL07p015956 Quercus lobata HOM05D004830 ORTHO05D005310 1.3e-12 77.0 108 46.3
ATR0307G071 Amborella trichopoda HOM05D004830 ORTHO05D005310 1.7e-12 76.6 104 50.0
Ca_03431_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 2.9e-12 75.9 84 54.8
SEGI_37187 Sequoiadendron giganteum HOM05D004830 ORTHO05D005310 8.4e-12 74.3 86 51.2
Aqoxy2G00040 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 1.1e-11 73.9 83 50.6
Prupe.1G058500 Prunus persica HOM05D004830 ORTHO05D005310 2.4e-11 72.8 112 42.0
Hma1.2p1_0894F.1_g233680 Hydrangea macrophylla HOM05D004830 ORTHO05D005310 4.2e-11 72.0 86 50.0
Aqoxy4G00834 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 9.3e-11 70.9 114 41.2
TPR.G23653 Trifolium pratense HOM05D004830 ORTHO05D005310 9.3e-11 70.9 84 54.8
MELO3C015625.2 Cucumis melo HOM05D000045 ORTHO05D000067 1.6e-10 70.1 127 39.4
CsaV3_1G042070 Cucumis sativus L. HOM05D000045 ORTHO05D000067 1.6e-10 70.1 127 39.4
Migut.J01591 Erythranthe guttata HOM05D004830 ORTHO05D005310 1.6e-10 70.1 88 47.7
Hund18829 Selenicereus undatus HOM05D000045 ORTHO05D000067 1.6e-10 70.1 69 56.5
Cpa.g.sc103.69 Carica papaya HOM05D004830 ORTHO05D000067 2.1e-10 69.7 66 57.6
Potri.004G196300 Populus trichocarpa HOM05D000045 ORTHO05D000067 2.1e-10 69.7 69 56.5
Potri.009G158400 Populus trichocarpa HOM05D000045 ORTHO05D000067 2.1e-10 69.7 69 56.5
Sabra09G0124000 Salix brachista HOM05D000045 ORTHO05D000067 2.1e-10 69.7 69 56.5
Thecc.09G337000 Theobroma cacao HOM05D000045 ORTHO05D000067 2.1e-10 69.7 65 58.5
CSS0018867 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.7e-10 69.3 69 55.1
CSS0049479 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.7e-10 69.3 69 55.1
Cfa019887 Carpinus fangiana HOM05D004830 ORTHO05D005310 2.7e-10 69.3 82 50.0
AUR62001611 Chenopodium quinoa HOM05D000045 ORTHO05D000067 2.7e-10 69.3 83 49.4
Duzib168G0153 Durio zibethinus HOM05D000045 ORTHO05D000067 2.7e-10 69.3 65 58.5
Solyc06g073670.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 2.7e-10 69.3 71 54.9
Ah.08g222800 Amaranthus hybridus HOM05D000045 ORTHO05D000067 3.5e-10 68.9 82 50.0
Dinv05235 Davidia involucrata HOM05D000045 ORTHO05D000067 3.5e-10 68.9 66 59.1
Sc12g0000520 Simmondsia chinensis HOM05D000045 ORTHO05D000067 3.5e-10 68.9 81 54.3
Dinv32075 Davidia involucrata HOM05D000045 ORTHO05D000067 4.6e-10 68.6 66 59.1
Gohir.D03G133000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 4.6e-10 68.6 85 49.4
Gorai.003G140100 Gossypium raimondii HOM05D000045 ORTHO05D000067 4.6e-10 68.6 85 49.4
Manes.11G111500 Manihot esculenta HOM05D000045 ORTHO05D000067 6.0e-10 68.2 70 52.9
Atru.chr3.3011 Acer truncatum HOM05D000045 ORTHO05D000067 7.9e-10 67.8 65 56.9
AUR62020169 Chenopodium quinoa HOM05D000045 ORTHO05D000067 7.9e-10 67.8 81 49.4
Rhsim13G0200800 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.9e-10 67.8 66 57.6
Sopen06g030080 Solanum pennellii HOM05D000045 ORTHO05D000067 7.9e-10 67.8 71 53.5
Psat0s1748g0080 Pisum sativum HOM05D000045 ORTHO05D000067 1.0e-09 67.4 73 52.1
Sed0013380 Sechium edule HOM05D000045 ORTHO05D000067 1.0e-09 67.4 127 38.6
Actinidia37189 Actinidia chinensis HOM05D004830 ORTHO05D005310 1.3e-09 67.0 65 56.9
Ciclev10018084m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.3e-09 67.0 66 54.5
Gorai.007G250900 Gossypium raimondii HOM05D004830 ORTHO05D005310 1.3e-09 67.0 66 60.6
SGA_v2.0_scaffold79G25517 Striga asiatica HOM05D000045 ORTHO05D005310 1.3e-09 67.0 72 51.4
TAR623G0545 Trochodendron aralioides HOM05D001075 ORTHO05D001779 1.3e-09 67.0 66 57.6
CANSAT54G2310 Cannabis sativa HOM05D000045 ORTHO05D000067 1.8e-09 66.6 93 44.1
Medtr7g087480 Medicago truncatula HOM05D004830 ORTHO05D005310 1.8e-09 66.6 84 48.8
Prupe.5G010000 Prunus persica HOM05D000045 ORTHO05D000067 1.8e-09 66.6 94 43.6
EL10Ac7g16221 Beta vulgaris HOM05D000045 ORTHO05D000067 2.3e-09 66.2 82 47.6
Duzib170G0988 Durio zibethinus HOM05D000045 ORTHO05D000067 2.3e-09 66.2 66 54.5
Gohir.A03G035200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.3e-09 66.2 66 57.6
Hma1.2p1_0218F.1_g092600 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 2.3e-09 66.2 66 56.1
Ca_16238_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 3.0e-09 65.9 82 47.6
Gorai.004G227400 Gossypium raimondii HOM05D000045 ORTHO05D000067 3.0e-09 65.9 66 56.1
Peaxi162Scf00526g00068 Petunia axillaris HOM05D000045 ORTHO05D000067 3.0e-09 65.9 65 56.9
TAR369G0694 Trochodendron aralioides HOM05D004830 ORTHO05D005310 3.0e-09 65.9 66 56.1
CiPaw.14G091900 Carya illinoinensis HOM05D000045 ORTHO05D000067 3.9e-09 65.5 65 55.4
Gohir.A08G196200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 3.9e-09 65.5 66 56.1
Gohir.D08G213300 Gossypium hirsutum HOM05D000045 ORTHO05D000067 3.9e-09 65.5 66 56.1
Nitab4.5_0000271g0200 Nicotiana tabacum HOM05D000045 ORTHO05D000067 3.9e-09 65.5 65 56.9
Nitab4.5_0002184g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 3.9e-09 65.5 65 56.9
CAN.G65.213 Capsicum annuum HOM05D000045 ORTHO05D000067 5.1e-09 65.1 65 56.9
Haze_23661 Corylus avellana HOM05D000045 ORTHO05D000067 5.1e-09 65.1 66 54.5
GSVIVG01037455001 Vitis vinifera HOM05D000045 ORTHO05D000067 5.1e-09 65.1 65 55.4
ECA240G1554 Erigeron canadensis HOM05D000045 ORTHO05D000067 6.7e-09 64.7 70 50.0
MD06G1010400 Malus domestica HOM05D000045 ORTHO05D000067 6.7e-09 64.7 94 42.6
MD16G1283900 Malus domestica HOM05D000045 ORTHO05D000067 6.7e-09 64.7 93 43.0
QL01p020366 Quercus lobata HOM05D000045 ORTHO05D000067 6.7e-09 64.7 66 54.5
Glyma.20G053500 Glycine max HOM05D000045 ORTHO05D000067 1.1e-08 63.9 71 47.9
PGR119G0427 Punica granatum HOM05D000045 ORTHO05D000067 1.1e-08 63.9 65 55.4
CiPaw.11G008200 Carya illinoinensis HOM05D004830 ORTHO05D005310 1.5e-08 63.5 84 44.0
CDE04G2621 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 1.5e-08 63.5 64 54.7
Lalb_Chr10g0105861 Lupinus albus HOM05D000045 ORTHO05D000067 2.5e-08 62.8 83 43.4
MSTRG.20481 Avicennia marina HOM05D000045 ORTHO05D000067 3.3e-08 62.4 122 36.9
Haze_20367 Corylus avellana HOM05D004830 ORTHO05D005310 3.3e-08 62.4 65 53.8
Ciclev10000255m.g Citrus clementina HOM05D000045 ORTHO05D000067 4.3e-08 62.0 125 35.2
HanXRQChr03g0091681 Helianthus annuus HOM05D000045 ORTHO05D000067 4.3e-08 62.0 66 51.5
CARHR119430 Cardamine hirsuta HOM05D000045 ORTHO05D000067 5.6e-08 61.6 70 48.6
Lj6g0022384 Lotus japonicus HOM05D000045 ORTHO05D000067 5.6e-08 61.6 66 51.5
PSO384G0901 Papaver somniferum HOM05D000045 ORTHO05D000067 5.6e-08 61.6 65 55.4
Migut.N02416 Erythranthe guttata HOM05D000045 ORTHO05D000067 7.4e-08 61.2 69 49.3
PSO339G0029 Papaver somniferum HOM05D000045 ORTHO05D000067 7.4e-08 61.2 65 55.4
TPR.G19401 Trifolium pratense HOM05D000045 ORTHO05D000067 7.4e-08 61.2 66 51.5
Aa31LG5G8500 Aethionema arabicum HOM05D000045 ORTHO05D000067 9.6e-08 60.8 70 48.6
ATR0561G210 Amborella trichopoda HOM05D004830 ORTHO05D005310 9.6e-08 60.8 72 48.6
arahy.Tifrunner.gnm1.ann1.F6YBSJ Arachis hypogaea HOM05D004830 ORTHO05D005310 9.6e-08 60.8 65 53.8
arahy.Tifrunner.gnm1.ann1.W6VT7I Arachis hypogaea HOM05D004830 ORTHO05D005310 9.6e-08 60.8 65 53.8
Cfa018828 Carpinus fangiana HOM05D004830 ORTHO05D005310 9.6e-08 60.8 84 41.7
Dinv03226 Davidia involucrata HOM05D000045 ORTHO05D000067 9.6e-08 60.8 65 52.3
Lsat_1_v5_gn_3_115961 Lactuca sativa HOM05D000045 ORTHO05D000067 9.6e-08 60.8 66 51.5
RcHm_v2.0_Chr1g0335301 Rosa chinensis HOM05D000045 ORTHO05D000067 9.6e-08 60.8 66 53.0
TWI31G1093 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 9.6e-08 60.8 64 51.6
FvH4_7g06621 Fragaria vesca HOM05D000045 ORTHO05D000067 1.3e-07 60.5 66 54.5
Carub.0004s0760 Capsella rubella HOM05D000045 ORTHO05D000067 1.6e-07 60.1 70 47.1
Dinv14555 Davidia involucrata HOM05D004830 ORTHO05D005310 1.6e-07 60.1 130 38.5
Phvul.L004237 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 1.6e-07 60.1 71 46.5
Dinv13639 Davidia involucrata HOM05D004830 ORTHO05D005310 2.1e-07 59.7 80 47.5
A03p26760 Brassica napus HOM05D000045 ORTHO05D000067 2.8e-07 59.3 70 47.1
C03p32060 Brassica napus HOM05D000045 ORTHO05D000067 2.8e-07 59.3 70 47.1
BolC3t15550H Brassica oleracea HOM05D000045 ORTHO05D000067 2.8e-07 59.3 70 47.1
BraA03t11887Z Brassica rapa HOM05D000045 ORTHO05D000067 2.8e-07 59.3 70 47.1
DCAR_013505 Daucus carota HOM05D004830 ORTHO05D005310 2.8e-07 59.3 70 48.6
SalBow6G3381 Salvia bowleyana HOM05D004830 ORTHO05D005310 2.8e-07 59.3 73 46.6
GSVIVG01027346001 Vitis vinifera HOM05D004830 ORTHO05D005310 2.8e-07 59.3 65 52.3
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.7e-07 58.9 63 52.4
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 3.7e-07 58.9 63 52.4
CDE08G0868 Ceratophyllum demersum HOM05D000045 ORTHO05D005310 3.7e-07 58.9 70 45.7
Ca_24121_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 3.7e-07 58.9 66 48.5
Rhsim12G0174200 Rhododendron simsii HOM05D004830 ORTHO05D005310 3.7e-07 58.9 72 44.4
Atru.chr9.1044 Acer truncatum HOM05D004830 ORTHO05D005310 4.8e-07 58.5 79 45.6
AL4G20800 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 6.2e-07 58.2 70 45.7
CANSAT56G2476 Cannabis sativa HOM05D000045 ORTHO05D000067 6.2e-07 58.2 66 50.0
Ca_06147_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 6.2e-07 58.2 86 38.4
Glyma.15G222102 Glycine max HOM05D004830 ORTHO05D005310 6.2e-07 58.2 65 49.2
CSS0034026 Camellia sinensis var. sinensis HOM05D004830 ORTHO05D005310 8.1e-07 57.8 72 44.4
CAN.G134.48 Capsicum annuum HOM05D000045 ORTHO05D000067 8.1e-07 57.8 80 43.8
Thhalv10001905m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 8.1e-07 57.8 70 45.7
CSS0048806 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.1e-06 57.4 65 49.2
Glyma.08G227500 Glycine max HOM05D000045 ORTHO05D000067 1.1e-06 57.4 65 47.7
TPR.G11676 Trifolium pratense HOM05D000045 ORTHO05D000067 1.1e-06 57.4 66 50.0
AT2G27110 Arabidopsis thaliana HOM05D000045 ORTHO05D000067 1.4e-06 57.0 70 44.3
ATR0332G003 Amborella trichopoda HOM05D004830 ORTHO05D005310 1.8e-06 56.6 72 45.8
CiPaw.13G047500 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.8e-06 56.6 65 50.8
Eucgr.G02634 Eucalyptus grandis HOM05D000045 ORTHO05D000067 1.8e-06 56.6 70 48.6
LjContig00564g0008214 Lotus japonicus HOM05D000045 ORTHO05D000067 1.8e-06 56.6 136 30.1
Lalb_Chr03g0032401 Lupinus albus HOM05D000045 ORTHO05D000067 1.8e-06 56.6 65 49.2
Manes.14G051600 Manihot esculenta HOM05D004830 ORTHO05D005310 1.8e-06 56.6 79 43.0
Prupe.2G058900 Prunus persica HOM05D000045 ORTHO05D000067 1.8e-06 56.6 66 48.5
MD07G1054000 Malus domestica HOM05D000045 ORTHO05D000067 2.4e-06 56.2 64 48.4
QL10p003269 Quercus lobata HOM05D004830 ORTHO05D005310 2.4e-06 56.2 78 41.0
RcHm_v2.0_Chr1g0338891 Rosa chinensis HOM05D004830 ORTHO05D005310 2.4e-06 56.2 100 37.0
Atru.chr12.1141 Acer truncatum HOM05D000045 ORTHO05D000067 3.1e-06 55.8 66 47.0
DCAR_014362 Daucus carota HOM05D004830 ORTHO05D005310 3.1e-06 55.8 108 35.2
RhsimUnG0023100 Rhododendron simsii HOM05D004830 ORTHO05D005310 3.1e-06 55.8 70 50.0
TAR622G0015 Trochodendron aralioides HOM05D004830 ORTHO05D005310 3.1e-06 55.8 78 39.7
Nitab4.5_0001611g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 4.0e-06 55.5 71 43.7
THA.LOC104800493 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 4.0e-06 55.5 70 45.7
GSVIVG01025859001 Vitis vinifera HOM05D004830 ORTHO05D005310 4.0e-06 55.5 69 49.3
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 5.3e-06 55.1 83 39.8
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.3e-06 55.1 65 50.8
Thecc.03G128400 Theobroma cacao HOM05D004830 ORTHO05D005310 5.3e-06 55.1 72 43.1
Thecc.10G131800 Theobroma cacao HOM05D000045 ORTHO05D000067 5.3e-06 55.1 66 48.5
Aqoxy7G00964 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 6.9e-06 54.7 78 39.7
Duzib084G0035 Durio zibethinus HOM05D004830 ORTHO05D005310 6.9e-06 54.7 83 38.6
Migut.N01873 Erythranthe guttata HOM05D000045 ORTHO05D000067 6.9e-06 54.7 65 46.2
Nn3g16476 Nelumbo nucifera HOM05D004830 ORTHO05D005310 6.9e-06 54.7 78 39.7
QL10p003210 Quercus lobata HOM05D004830 ORTHO05D005310 6.9e-06 54.7 78 39.7
Actinidia08868 Actinidia chinensis HOM05D004830 ORTHO05D005310 9.0e-06 54.3 72 43.1
COL.COLO4_32859 Corchorus olitorius HOM05D000045 ORTHO05D000067 9.0e-06 54.3 68 47.1
Gohir.A05G397800 Gossypium hirsutum HOM05D000045 ORTHO05D000067 9.0e-06 54.3 66 47.0
Gohir.A10G192000 Gossypium hirsutum HOM05D000045 ORTHO05D000067 9.0e-06 54.3 66 47.0
RcHm_v2.0_Chr1g0331031 Rosa chinensis HOM05D000045 ORTHO05D000067 9.0e-06 54.3 64 45.3
vmacro20843 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 9.0e-06 54.3 66 43.9
HPP92_013617 Vanilla planifolia HOM05D004830 ORTHO05D005310 9.0e-06 54.3 79 43.0


User provided reference genes

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