Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 3.6e-309 1064.3 624 100.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.5e-203 711.8 577 80.1
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.1e-116 424.9 606 55.3
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 8.7e-114 415.2 604 53.3
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.9e-101 373.6 612 50.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.6e-99 366.3 577 50.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 6.1e-99 365.9 597 42.9
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 3.3e-97 360.1 582 50.0
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 3.7e-96 356.7 588 53.1
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 3.7e-96 356.7 591 53.1
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.9e-93 347.1 600 48.0
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 6.1e-91 339.3 607 44.8
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.3e-90 337.4 585 46.8
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 3.9e-90 336.7 600 45.3
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 7.4e-89 332.4 580 49.7
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 6.3e-88 329.3 575 48.2
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 1.1e-87 328.6 610 48.9
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 4.1e-87 326.6 585 47.2
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 4.1e-87 326.6 629 42.4
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.3e-87 326.2 578 39.6
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.5e-86 324.7 589 48.0
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.6e-86 323.9 609 48.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 4.5e-86 323.2 590 48.3
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 7.7e-86 322.4 596 48.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 6.5e-85 319.3 596 43.3
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 6.5e-85 319.3 600 46.7
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 6.5e-85 319.3 606 43.6
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.1e-84 318.5 612 37.6
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 1.9e-84 317.8 589 48.0
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 2.5e-84 317.4 574 46.7
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 3.2e-84 317.0 574 46.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 3.2e-84 317.0 588 47.4
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.2e-84 316.6 591 43.1
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 4.2e-84 316.6 592 39.5
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 5.5e-84 316.2 601 37.1
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 7.2e-84 315.8 611 40.9
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.2e-83 315.1 586 46.8
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 2.1e-83 314.3 576 39.9
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.1e-83 314.3 561 45.8
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.1e-83 314.3 586 48.0
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.3e-82 310.8 611 45.7
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.9e-82 310.1 580 45.2
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 5.1e-82 309.7 595 46.4
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 2.0e-81 307.8 581 46.3
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 2.0e-81 307.8 589 43.3
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 4.4e-81 306.6 583 47.5
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 4.4e-81 306.6 578 40.0
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 7.4e-81 305.8 584 45.5
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 9.7e-81 305.4 567 38.4
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 1.3e-80 305.1 614 47.6
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.4e-79 300.8 589 44.8
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 4.1e-79 300.1 600 43.2
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 4.1e-79 300.1 597 44.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 5.3e-79 299.7 642 41.4
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 5.3e-79 299.7 592 37.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.2e-78 298.5 600 48.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.6e-78 298.1 605 44.6
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 2.6e-78 297.4 579 45.6
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 3.5e-78 297.0 581 45.3
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 5.9e-78 296.2 607 39.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.9e-77 293.9 581 44.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 8.5e-77 292.4 610 41.5
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.5e-76 291.6 573 45.7
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 1.9e-76 291.2 602 44.7
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.5e-76 290.8 607 41.8
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 2.7e-75 287.3 573 44.9
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 1.4e-74 285.0 605 45.1
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 6.7e-74 282.7 595 41.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.1e-73 282.0 603 42.5
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.4e-73 280.0 600 43.2
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 7.5e-73 279.3 664 38.4
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 9.7e-73 278.9 589 39.7
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.7e-73 278.9 600 42.5
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.8e-72 277.3 515 48.9
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.3e-72 276.2 600 42.2
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 9.1e-71 272.3 593 44.2
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 1.3e-69 268.5 618 36.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.2e-69 267.7 581 41.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 6.5e-69 266.2 583 44.4
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 8.5e-69 265.8 602 43.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.1e-68 265.4 584 45.9
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 1.9e-68 264.6 594 38.2
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 2.5e-68 264.2 590 44.1
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 7.2e-68 262.7 617 43.1
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 7.2e-68 262.7 601 42.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 9.4e-68 262.3 589 44.8
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.6e-67 261.5 561 44.6
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.0e-66 258.8 626 39.6
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.3e-66 257.7 582 41.9
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.0e-65 254.6 652 37.4
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.4e-65 253.4 574 43.6
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 9.8e-65 252.3 591 43.5
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 9.8e-65 252.3 611 40.9
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 8.3e-64 249.2 601 43.6
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.1e-63 246.9 579 44.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.1e-63 246.9 667 38.4
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.2e-62 245.4 588 42.2
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 5.0e-61 240.0 615 41.5
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 8.5e-61 239.2 466 45.9
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 1.5e-60 238.4 529 42.9
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.2e-60 237.3 529 42.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.1e-59 233.0 574 42.5
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.0e-58 232.3 574 42.5
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.8e-58 231.5 527 41.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 3.0e-58 230.7 527 41.6
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.7e-56 224.9 569 43.2
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.3e-53 215.3 468 44.4
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.3e-53 215.3 597 35.7
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 1.6e-46 191.8 592 29.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.5e-44 185.3 625 35.8
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 2.3e-42 177.9 273 42.5
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 9.8e-33 146.0 259 40.9
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.9e-31 141.7 273 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.3e-29 134.8 591 29.9
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.1e-29 133.7 111 59.5
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.5e-28 131.3 291 35.4
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.3e-28 131.0 159 49.7
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 3.6e-27 127.5 170 44.1
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 7.6e-25 119.8 135 49.6
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 9.9e-25 119.4 225 34.7
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.1e-23 114.0 175 44.0
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 3.3e-20 104.4 270 35.6
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 1.2e-19 102.4 286 32.2
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.2e-19 102.4 123 43.1
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 8.1e-19 99.8 285 32.6
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.4e-07 62.4 120 32.5
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 1.4e-07 62.4 102 44.1


User provided reference genes

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