Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 1.1e-47 193.0 101 100.0
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 8.2e-30 133.7 87 79.3
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 4.7e-17 91.3 68 70.6
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 7.9e-17 90.5 68 73.5
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 1.8e-16 89.4 68 70.6
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 3.9e-16 88.2 68 70.6
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 6.7e-16 87.4 68 70.6
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 6.7e-16 87.4 68 70.6
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 6.7e-16 87.4 79 62.0
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 8.8e-16 87.0 70 67.1
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 1.1e-15 86.7 68 69.1
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.5e-15 86.3 69 69.6
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 1.5e-15 86.3 60 73.3
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 1.5e-15 86.3 88 56.8
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 1.5e-15 86.3 86 54.7
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 1.5e-15 86.3 60 70.0
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.0e-15 85.9 74 63.5
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 2.6e-15 85.5 70 67.1
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 2.6e-15 85.5 68 67.6
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 3.3e-15 85.1 70 65.7
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 4.4e-15 84.7 69 68.1
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 4.4e-15 84.7 68 63.2
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 5.7e-15 84.3 76 61.8
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 7.4e-15 84.0 75 62.7
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 9.7e-15 83.6 60 70.0
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 9.7e-15 83.6 68 67.6
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 9.7e-15 83.6 82 61.0
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 1.3e-14 83.2 68 64.7
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 1.3e-14 83.2 68 64.7
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 1.7e-14 82.8 68 67.6
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 1.7e-14 82.8 68 67.6
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 1.7e-14 82.8 60 68.3
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 1.7e-14 82.8 60 70.0
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 2.2e-14 82.4 69 65.2
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 2.2e-14 82.4 68 67.6
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 2.2e-14 82.4 68 67.6
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 2.8e-14 82.0 62 66.1
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.8e-14 82.0 81 59.3
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 2.8e-14 82.0 68 67.6
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 3.7e-14 81.6 68 66.2
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 3.7e-14 81.6 68 66.2
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 3.7e-14 81.6 69 65.2
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 4.8e-14 81.3 69 63.8
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 4.8e-14 81.3 66 65.2
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 4.8e-14 81.3 68 66.2
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 4.8e-14 81.3 60 68.3
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 4.8e-14 81.3 60 68.3
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 4.8e-14 81.3 60 68.3
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 6.3e-14 80.9 68 64.7
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 6.3e-14 80.9 68 64.7
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 6.3e-14 80.9 60 68.3
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 8.2e-14 80.5 68 66.2
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 8.2e-14 80.5 68 66.2
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 8.2e-14 80.5 68 66.2
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 8.2e-14 80.5 68 61.8
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 8.2e-14 80.5 61 65.6
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 8.2e-14 80.5 60 68.3
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 1.1e-13 80.1 71 59.2
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 1.1e-13 80.1 68 61.8
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.1e-13 80.1 60 68.3
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 1.1e-13 80.1 68 63.2
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 1.4e-13 79.7 90 50.0
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 1.4e-13 79.7 60 68.3
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 1.4e-13 79.7 60 66.7
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.8e-13 79.3 60 65.0
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 2.4e-13 79.0 78 55.1
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 2.4e-13 79.0 68 63.2
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 3.1e-13 78.6 60 65.0
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 3.1e-13 78.6 60 65.0
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 3.1e-13 78.6 61 65.6
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 3.1e-13 78.6 98 51.0
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 4.1e-13 78.2 60 68.3
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.1e-13 78.2 69 63.8
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 4.1e-13 78.2 79 59.5
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 4.1e-13 78.2 67 65.7
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 4.1e-13 78.2 69 58.0
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 4.1e-13 78.2 60 61.7
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 4.1e-13 78.2 70 65.7
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 5.3e-13 77.8 71 60.6
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 5.3e-13 77.8 68 58.8
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.3e-13 77.8 68 60.3
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 5.3e-13 77.8 68 63.2
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 5.3e-13 77.8 68 66.2
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 5.3e-13 77.8 68 66.2
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 7.0e-13 77.4 68 63.2
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 7.0e-13 77.4 68 64.7
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 7.0e-13 77.4 68 60.3
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 7.0e-13 77.4 60 63.3
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 7.0e-13 77.4 60 63.3
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 9.1e-13 77.0 68 61.8
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 9.1e-13 77.0 60 63.3
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 9.1e-13 77.0 60 65.0
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 1.2e-12 76.6 60 65.0
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.2e-12 76.6 62 67.7
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 1.2e-12 76.6 68 64.7
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.2e-12 76.6 68 61.8
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 1.2e-12 76.6 68 61.8
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 1.6e-12 76.3 60 63.3
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.0e-12 75.9 68 63.2
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.0e-12 75.9 68 63.2
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 2.0e-12 75.9 66 62.1
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 2.0e-12 75.9 60 63.3
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 2.6e-12 75.5 81 51.9
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 3.5e-12 75.1 62 61.3
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 3.5e-12 75.1 59 62.7
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.5e-12 75.1 68 61.8
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.5e-12 75.1 68 61.8
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 3.5e-12 75.1 62 64.5
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 3.5e-12 75.1 69 59.4
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 4.5e-12 74.7 68 61.8
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 4.5e-12 74.7 71 57.7
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 5.9e-12 74.3 61 60.7
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 5.9e-12 74.3 60 65.0
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 5.9e-12 74.3 69 58.0
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 5.9e-12 74.3 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 7.7e-12 73.9 59 57.6
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 7.7e-12 73.9 60 61.7
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 1.0e-11 73.6 60 61.7
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 1.0e-11 73.6 60 61.7
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 1.0e-11 73.6 60 63.3
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 1.0e-11 73.6 60 63.3
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 1.0e-11 73.6 60 63.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 1.0e-11 73.6 68 61.8
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.3e-11 73.2 80 53.8
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 1.3e-11 73.2 60 61.7
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.7e-11 72.8 60 63.3
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 1.7e-11 72.8 60 60.0
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 1.7e-11 72.8 60 60.0
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 1.7e-11 72.8 60 61.7
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 1.7e-11 72.8 60 61.7
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.7e-11 72.8 68 61.8
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 2.2e-11 72.4 60 58.3
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.9e-11 72.0 68 60.3
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 3.8e-11 71.6 81 50.6
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 5.0e-11 71.2 69 55.1
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 6.5e-11 70.9 68 60.3
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 6.5e-11 70.9 68 60.3
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 6.5e-11 70.9 68 60.3
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 6.5e-11 70.9 60 61.7
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 8.5e-11 70.5 68 58.8
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.1e-10 70.1 68 55.9
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 1.5e-10 69.7 68 57.4
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.9e-10 69.3 70 57.1
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 4.2e-10 68.2 68 57.4
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 1.2e-09 66.6 50 66.0
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 3.6e-09 65.1 49 65.3
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.6e-09 65.1 53 67.9
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 1.4e-08 63.2 58 53.4
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.8e-08 62.8 50 62.0
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 9.7e-07 57.0 68 45.6
Pp3c19_5160 Physcomitrium patens HOM05D004126 ORTHO05D004818 9.7e-07 57.0 61 49.2
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 4.8e-06 54.7 45 57.8
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 6.3e-06 54.3 54 57.4
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 6.3e-06 54.3 74 47.3


User provided reference genes

Program Settings