Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2432 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.9e-148 528.5 253 100.0
CDE09G0004 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.7e-60 236.9 120 95.0
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.6e-26 122.9 73 80.8
CDE09G0976 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.2e-24 117.9 142 56.3
Ciclev10001735m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.6e-21 107.5 67 71.6
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 7.8e-21 105.1 86 60.5
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 1.7e-20 104.0 86 57.0
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 3.0e-20 103.2 121 43.8
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 3.9e-20 102.8 86 55.8
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 6.6e-20 102.1 79 62.0
Lalb_Chr19g0132951 Lupinus albus HOM05D005005 ORTHO05D006178 8.6e-20 101.7 66 71.2
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.5e-19 100.9 67 70.1
QL04p021121 Quercus lobata HOM05D005005 ORTHO05D006178 1.9e-19 100.5 67 68.7
QL93p0049_0022 Quercus lobata HOM05D005005 ORTHO05D006178 1.9e-19 100.5 67 68.7
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 2.5e-19 100.1 119 43.7
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 2.5e-19 100.1 67 67.2
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 2.5e-19 100.1 67 68.7
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 3.3e-19 99.8 70 62.9
MSTRG.20501 Avicennia marina HOM05D005005 ORTHO05D006178 4.3e-19 99.4 67 68.7
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 4.3e-19 99.4 67 67.2
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 5.6e-19 99.0 80 61.2
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Gohir.D06G184600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Gorai.010G215900 Gossypium raimondii HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Lalb_Chr03g0032191 Lupinus albus HOM05D005005 ORTHO05D006178 5.6e-19 99.0 63 73.0
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
Potri.001G030900 Populus trichocarpa HOM05D005005 ORTHO05D006178 5.6e-19 99.0 67 67.2
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 5.6e-19 99.0 70 62.9
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 5.6e-19 99.0 68 66.2
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 7.3e-19 98.6 86 57.0
CDE04G0220 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.3e-19 98.6 119 42.9
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 7.3e-19 98.6 67 65.7
Glyma.15G230500 Glycine max HOM05D005005 ORTHO05D006178 7.3e-19 98.6 63 73.0
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 7.3e-19 98.6 61 72.1
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 7.3e-19 98.6 67 67.2
Cc09_g07690 Coffea canephora HOM05D005005 ORTHO05D006178 9.5e-19 98.2 67 67.2
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 9.5e-19 98.2 67 65.7
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.2e-18 97.8 64 68.8
Lj3g0014782 Lotus japonicus HOM05D005005 ORTHO05D006178 1.2e-18 97.8 63 73.0
MD02G1278000 Malus domestica HOM05D005005 ORTHO05D006178 1.2e-18 97.8 67 67.2
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 1.2e-18 97.8 67 67.2
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 1.2e-18 97.8 119 41.2
Sabra03G0145000 Salix brachista HOM05D005005 ORTHO05D006178 1.2e-18 97.8 67 67.2
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.2e-18 97.8 67 67.2
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.6e-18 97.4 86 58.1
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 2.1e-18 97.1 61 70.5
Glyma.13G192200 Glycine max HOM05D005005 ORTHO05D006178 2.1e-18 97.1 63 71.4
HanXRQChr01g0003701 Helianthus annuus HOM05D005005 ORTHO05D006178 2.1e-18 97.1 77 62.3
Lj7A493G34 Lonicera japonica HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 67.2
Manes.04G156500 Manihot esculenta HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 65.7
Prupe.2G042700 Prunus persica HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 67.2
Rhsim07G0069000 Rhododendron simsii HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 67.2
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 65.7
TPR.G8528 Trifolium pratense HOM05D005005 ORTHO05D006178 2.1e-18 97.1 63 71.4
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 2.1e-18 97.1 67 67.2
Nitab4.5_0004168g0100 Nicotiana tabacum HOM05D005005 ORTHO05D006178 2.8e-18 96.7 119 42.0
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 2.8e-18 96.7 63 71.4
Potri.003G194300 Populus trichocarpa HOM05D005005 ORTHO05D006178 2.8e-18 96.7 67 67.2
RcHm_v2.0_Chr1g0326491 Rosa chinensis HOM05D005005 ORTHO05D006178 2.8e-18 96.7 67 67.2
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 2.8e-18 96.7 63 71.4
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 3.6e-18 96.3 61 70.5
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 3.6e-18 96.3 74 60.8
CSS0003849 Camellia sinensis var. sinensis HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 3.6e-18 96.3 113 46.0
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 3.6e-18 96.3 87 56.3
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 3.6e-18 96.3 67 65.7
arahy.Tifrunner.gnm1.ann1.1L47SY Arachis hypogaea HOM05D005005 ORTHO05D006178 4.7e-18 95.9 106 52.8
arahy.Tifrunner.gnm1.ann1.HP7LLE Arachis hypogaea HOM05D005005 ORTHO05D006178 4.7e-18 95.9 106 52.8
Cpa.g.sc169.39 Carica papaya HOM05D005005 ORTHO05D006178 4.7e-18 95.9 67 65.7
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 4.7e-18 95.9 61 72.1
ClCG08G010820 Citrullus lanatus HOM05D005005 ORTHO05D006178 4.7e-18 95.9 61 72.1
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 4.7e-18 95.9 67 65.7
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 4.7e-18 95.9 61 72.1
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 4.7e-18 95.9 70 61.4
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 6.2e-18 95.5 61 68.9
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 6.2e-18 95.5 86 54.7
Gohir.A06G174600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 6.2e-18 95.5 67 65.7
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 6.2e-18 95.5 63 69.8
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 6.2e-18 95.5 61 70.5
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 8.1e-18 95.1 67 64.2
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 8.1e-18 95.1 61 68.9
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 8.1e-18 95.1 61 67.2
Ca_23977_v3 Cicer arietinum L. HOM05D005005 ORTHO05D006178 1.1e-17 94.7 61 70.5
ECA248G3166 Erigeron canadensis HOM05D005005 ORTHO05D006178 1.1e-17 94.7 116 45.7
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 1.1e-17 94.7 67 65.7
Nitab4.5_0002838g0130 Nicotiana tabacum HOM05D005005 ORTHO05D006178 1.1e-17 94.7 66 65.2
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.4e-17 94.4 61 67.2
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 1.4e-17 94.4 67 64.2
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.4e-17 94.4 74 59.5
Peaxi162Scf00220g00417 Petunia axillaris HOM05D005005 ORTHO05D006178 1.8e-17 94.0 66 65.2
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 2.4e-17 93.6 80 56.2
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.4e-17 93.6 63 65.1
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.4e-17 93.6 67 62.7
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.4e-17 93.6 63 68.3
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.4e-17 93.6 63 68.3
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 2.4e-17 93.6 61 68.9
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 2.4e-17 93.6 61 68.9
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 2.4e-17 93.6 61 68.9
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 3.1e-17 93.2 61 67.2
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.1e-17 93.2 81 55.6
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 3.1e-17 93.2 64 65.6
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 3.1e-17 93.2 64 65.6
Actinidia06222 Actinidia chinensis HOM05D005005 ORTHO05D006178 4.0e-17 92.8 61 68.9
Actinidia07969 Actinidia chinensis HOM05D005005 ORTHO05D006178 4.0e-17 92.8 61 68.9
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 4.0e-17 92.8 63 66.7
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 6.8e-17 92.0 63 65.1
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 6.8e-17 92.0 67 62.7
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 8.9e-17 91.7 97 49.5
SalBow5G3115 Salvia bowleyana HOM05D005005 ORTHO05D006178 8.9e-17 91.7 61 67.2
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 1.2e-16 91.3 63 66.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 1.5e-16 90.9 63 66.7
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 2.0e-16 90.5 106 47.2
unitig_61.g26369 Utricularia gibba HOM05D005005 ORTHO05D006178 2.0e-16 90.5 63 68.3
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 2.6e-16 90.1 63 66.7
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 3.4e-16 89.7 67 61.2
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 3.4e-16 89.7 63 65.1
SalBow6G0970 Salvia bowleyana HOM05D005005 ORTHO05D006178 3.4e-16 89.7 61 65.6
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 4.4e-16 89.4 67 62.7
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 5.8e-16 89.0 87 52.9
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 5.8e-16 89.0 87 52.9
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 9.9e-16 88.2 62 66.1
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 1.7e-15 87.4 63 65.1
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 2.2e-15 87.0 78 59.0
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 6.4e-15 85.5 64 59.4
Oeu013075.1 Olea europaea HOM05D005005 ORTHO05D006178 1.4e-14 84.3 83 50.6
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.4e-14 84.3 60 60.0
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 1.9e-14 84.0 66 59.1
Psat4g145120 Pisum sativum HOM05D005005 ORTHO05D006178 1.2e-13 81.3 59 62.7
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 2.7e-13 80.1 56 64.3
Ciclev10027527m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.5e-13 79.7 60 65.0
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 4.6e-13 79.3 61 62.3
Os11g0525900 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 6.0e-13 79.0 85 47.1
CDE02G4802 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.9e-11 73.9 35 100.0
TAR636G3532 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.9e-11 73.9 77 45.5
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 1.4e-09 67.8 74 44.6
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 9.0e-09 65.1 82 37.8
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 9.9e-08 61.6 61 44.3
Ciclev10027126m.g Citrus clementina HOM05D005005 ORTHO05D006178 2.2e-07 60.5 79 38.0


User provided reference genes

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