Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.0e-303 1045.0 553 100.0
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 8.7e-267 923.3 631 80.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-190 669.8 639 59.3
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.8e-187 659.8 642 58.7
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 7.8e-183 644.4 620 59.4
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.3e-182 643.7 630 58.6
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.9e-182 642.1 640 57.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 8.1e-180 634.4 642 56.4
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.1e-179 634.0 643 56.3
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.4e-179 632.9 645 55.5
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 2.6e-178 629.4 648 54.6
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.4e-178 628.6 635 54.2
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 5.8e-178 628.2 639 55.1
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 4.9e-177 625.2 637 56.4
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 6.4e-177 624.8 648 54.6
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.2e-176 622.5 650 55.4
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 4.2e-176 622.1 657 54.0
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 7.1e-176 621.3 648 54.0
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.2e-175 620.5 634 56.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.5e-175 619.0 644 54.8
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 3.5e-175 619.0 641 55.4
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 5.1e-174 615.1 640 55.3
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 5.1e-174 615.1 648 53.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 8.7e-174 614.4 651 54.8
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 8.7e-174 614.4 651 54.8
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.9e-173 613.2 652 55.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.3e-173 612.1 654 54.9
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 4.3e-173 612.1 641 54.9
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 5.6e-173 611.7 641 54.4
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 9.6e-173 610.9 631 55.6
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 9.6e-173 610.9 654 54.7
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 9.6e-173 610.9 639 54.3
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 4.8e-172 608.6 653 54.2
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 4.8e-172 608.6 647 53.8
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.4e-171 607.1 650 53.7
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.4e-171 606.3 655 53.7
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 5.3e-171 605.1 658 53.3
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 6.9e-171 604.7 649 54.4
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.5e-170 603.6 637 53.7
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 2.0e-170 603.2 653 53.4
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.6e-170 601.3 653 53.6
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.7e-169 600.1 648 53.5
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 4.9e-169 598.6 632 55.4
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.4e-169 597.8 641 53.5
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.4e-169 597.8 641 53.5
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 8.4e-169 597.8 644 53.6
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.9e-168 596.7 664 52.3
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.4e-168 596.3 664 52.7
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 3.2e-168 595.9 654 52.6
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 5.4e-168 595.1 638 54.1
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 7.1e-168 594.7 641 53.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.3e-168 594.3 615 54.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 4.6e-167 592.0 657 53.1
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 6.0e-167 591.7 644 53.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 2.3e-166 589.7 649 53.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.0e-166 589.3 631 54.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 3.9e-166 589.0 615 54.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.9e-166 589.0 653 53.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.9e-166 589.0 638 53.1
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 8.7e-166 587.8 637 52.7
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.9e-165 586.6 654 52.0
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 2.5e-165 586.3 624 54.0
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 9.6e-165 584.3 655 52.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.3e-164 583.9 646 51.7
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 1.6e-164 583.6 640 53.3
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.6e-164 583.6 644 51.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.6e-164 583.6 634 54.4
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.6e-164 582.4 655 52.2
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.4e-163 580.5 644 51.1
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 4.0e-163 578.9 654 51.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.0e-163 578.9 634 54.6
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 9.0e-163 577.8 644 50.8
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 1.5e-162 577.0 658 51.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.0e-162 576.6 657 50.8
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 2.0e-162 576.6 663 50.5
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-161 573.5 646 51.1
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 2.9e-161 572.8 642 51.2
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 2.9e-161 572.8 642 51.2
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.9e-161 572.8 640 52.5
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 4.9e-161 572.0 662 50.6
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 4.9e-161 572.0 656 50.8
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 4.9e-161 572.0 660 50.9
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 6.4e-161 571.6 650 50.9
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-160 570.9 656 51.2
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 3.2e-160 569.3 647 51.6
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 4.2e-160 568.9 644 53.4
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 7.1e-160 568.2 660 50.5
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 9.3e-160 567.8 597 55.1
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 9.3e-160 567.8 635 52.8
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.2e-159 567.4 662 50.3
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 3.5e-159 565.8 656 50.2
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 4.6e-159 565.5 657 50.7
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 7.9e-159 564.7 656 50.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 1.3e-158 563.9 656 50.6
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 1.3e-158 563.9 659 50.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.3e-158 563.9 647 50.5
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.0e-158 562.8 635 51.5
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 3.9e-158 562.4 658 50.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 6.7e-158 561.6 647 51.2
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.5e-157 560.5 635 51.5
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 4.3e-157 558.9 640 50.5
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.3e-156 557.4 648 50.8
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.4e-155 553.9 652 50.3
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.2e-154 550.8 594 52.9
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 2.6e-154 549.7 637 51.3
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.8e-154 548.5 652 50.3
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-152 544.3 660 49.2
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.3e-150 536.6 608 51.6
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.5e-149 533.9 652 49.7
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.5e-149 533.1 653 49.5
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 4.3e-149 532.3 586 52.4
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 8.2e-148 528.1 653 47.9
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.4e-147 527.3 655 49.6
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.9e-147 525.0 508 59.1
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.6e-143 512.3 617 50.4
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 6.9e-139 498.4 603 51.4
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 9.0e-139 498.0 577 52.0
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.0e-138 496.9 622 49.4
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 6.3e-108 395.6 586 44.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 8.3e-108 395.2 633 42.8
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.0e-107 392.1 538 45.9
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 6.8e-102 375.6 656 39.2
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.3e-97 361.3 657 37.1
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.6e-85 320.5 644 37.1
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.6e-81 305.8 350 50.6
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.3e-65 254.2 221 58.8
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 6.4e-60 236.1 320 46.2
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.9e-59 234.6 299 47.8
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 9.3e-59 232.3 399 39.1
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.2e-29 135.6 223 37.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 2.9e-28 131.0 118 51.7
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 2.5e-19 101.3 112 48.2
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.7e-12 78.6 118 40.7
CDE04G1231 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.9e-12 77.8 128 46.9
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 8.5e-12 76.3 77 49.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 8.8e-09 66.2 41 70.7
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.1e-06 56.2 52 55.8


User provided reference genes

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