Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 8.2e-40 166.4 73 100.0
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.0e-21 104.0 47 97.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.0e-18 94.4 50 86.0
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.2e-14 82.8 46 69.6
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 1.2e-14 82.8 46 73.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.2e-14 82.8 45 75.6
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.2e-14 82.8 51 66.7
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.6e-14 82.4 46 73.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.0e-14 82.0 51 64.7
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 2.7e-14 81.6 59 59.3
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-14 81.6 45 73.3
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.7e-14 81.6 46 69.6
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.7e-14 81.6 46 69.6
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.5e-14 81.3 51 64.7
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.5e-14 81.3 51 64.7
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.5e-14 81.3 45 73.3
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 3.5e-14 81.3 45 73.3
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 7.8e-14 80.1 45 68.9
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.0e-13 79.7 51 60.8
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.3e-13 79.3 51 66.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.3e-13 79.3 45 71.1
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.7e-13 79.0 46 67.4
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.7e-13 79.0 46 69.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 2.3e-13 78.6 46 69.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.3e-13 78.6 45 71.1
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.3e-13 78.6 46 71.7
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.9e-13 78.2 46 67.4
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.9e-13 78.2 46 69.6
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.9e-13 78.2 46 65.2
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.9e-13 77.8 45 71.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 3.9e-13 77.8 46 65.2
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 5.0e-13 77.4 46 67.4
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 6.6e-13 77.0 46 65.2
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 6.6e-13 77.0 51 60.8
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.6e-13 77.0 50 64.0
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 6.6e-13 77.0 50 62.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 6.6e-13 77.0 55 60.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 8.6e-13 76.6 51 62.7
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 8.6e-13 76.6 46 69.6
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 8.6e-13 76.6 46 67.4
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.1e-12 76.3 46 65.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-12 76.3 51 62.7
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-12 76.3 52 61.5
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.9e-12 75.5 56 64.3
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.9e-12 75.5 46 67.4
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 2.5e-12 75.1 45 64.4
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.5e-12 75.1 56 60.7
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 3.3e-12 74.7 46 60.9
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 3.3e-12 74.7 46 60.9
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.3e-12 74.7 52 59.6
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.3e-12 74.7 44 68.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 4.3e-12 74.3 46 65.2
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 7.3e-12 73.6 46 65.2
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 7.3e-12 73.6 46 60.9
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 7.3e-12 73.6 46 63.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.3e-12 73.6 46 65.2
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 7.3e-12 73.6 62 54.8
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 7.3e-12 73.6 46 60.9
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 9.5e-12 73.2 45 64.4
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 9.5e-12 73.2 46 65.2
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 9.5e-12 73.2 46 65.2
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 9.5e-12 73.2 46 65.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 9.5e-12 73.2 46 65.2
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-11 72.8 46 60.9
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-11 72.8 50 60.0
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.2e-11 72.8 46 63.0
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.6e-11 72.4 46 58.7
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.6e-11 72.4 46 63.0
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 1.6e-11 72.4 45 64.4
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.6e-11 72.4 62 54.8
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.1e-11 72.0 64 50.0
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 2.1e-11 72.0 44 65.9
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.8e-11 71.6 46 60.9
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 2.8e-11 71.6 46 56.5
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 2.8e-11 71.6 46 56.5
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 2.8e-11 71.6 51 52.9
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.8e-11 71.6 46 60.9
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.8e-11 71.6 52 57.7
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.6e-11 71.2 46 58.7
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.6e-11 71.2 46 58.7
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 3.6e-11 71.2 51 54.9
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 3.6e-11 71.2 44 65.9
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 3.6e-11 71.2 46 60.9
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 4.7e-11 70.9 46 63.0
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.7e-11 70.9 45 64.4
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 6.1e-11 70.5 46 58.7
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 6.1e-11 70.5 47 59.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 8.0e-11 70.1 46 63.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.0e-10 69.7 45 62.2
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.4e-10 69.3 48 66.7
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.8e-10 68.9 46 63.0
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.8e-10 68.9 44 63.6
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.3e-10 68.6 46 60.9
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.3e-10 68.6 68 47.1
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.1e-10 68.2 51 54.9
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 3.1e-10 68.2 56 51.8
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 4.0e-10 67.8 46 56.5
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.0e-10 67.8 46 60.9
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 5.2e-10 67.4 45 60.0
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 6.8e-10 67.0 45 60.0
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 6.8e-10 67.0 46 54.3
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 6.8e-10 67.0 45 62.2
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 8.9e-10 66.6 56 53.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 8.9e-10 66.6 46 56.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.2e-09 66.2 53 56.6
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.2e-09 66.2 48 62.5
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.2e-09 66.2 42 61.9
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.0e-09 65.5 45 62.2
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.6e-09 65.1 44 56.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.6e-09 65.1 38 65.8
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.4e-09 64.7 53 52.8
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 5.8e-09 63.9 44 56.8
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.5e-09 63.5 39 61.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.5e-09 63.5 39 64.1
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 7.5e-09 63.5 39 64.1
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.3e-08 62.8 46 58.7
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.3e-08 62.8 46 58.7
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.3e-08 62.8 39 64.1
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.2e-08 62.0 39 61.5
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.7e-08 61.2 37 64.9
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.7e-08 61.2 40 60.0
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 4.9e-08 60.8 39 56.4
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 1.1e-07 59.7 44 54.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 2.4e-07 58.5 39 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.2e-07 58.2 37 64.9
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 3.2e-07 58.2 42 57.1
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 9.2e-07 56.6 40 60.0
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.2e-06 56.2 40 57.5
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.6e-06 55.8 40 52.5
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.6e-06 55.8 49 53.1
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.0e-06 55.5 38 60.5
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 2.7e-06 55.1 36 61.1
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 2.7e-06 55.1 42 50.0
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.6e-06 54.3 38 63.2
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 4.6e-06 54.3 38 57.9


User provided reference genes

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