Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 0.0e+00 1330.1 678 100.0
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 1.8e-149 533.9 325 84.9
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 5.0e-139 499.2 655 47.5
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.7e-134 483.0 642 47.8
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.0e-132 477.2 628 48.2
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 4.5e-132 476.1 663 46.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 7.7e-132 475.3 640 46.4
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.3e-131 474.6 669 45.9
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.3e-131 474.6 669 45.9
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 4.2e-130 469.5 601 47.1
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 7.2e-130 468.8 684 45.3
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.2e-129 468.0 616 47.4
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 4.7e-129 466.1 677 44.2
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.2e-128 462.6 647 46.5
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.5e-127 461.1 642 46.6
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 6.3e-126 455.7 624 45.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.1e-125 454.9 642 46.1
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.4e-125 454.5 621 46.4
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-125 454.5 652 45.2
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.1e-125 453.4 640 47.2
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.1e-125 453.0 637 46.8
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.5e-124 449.9 642 46.7
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.0e-123 448.4 623 45.1
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 2.2e-123 447.2 655 44.1
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.8e-123 446.4 683 42.2
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 5.0e-123 446.0 654 45.7
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.9e-122 444.1 613 44.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.1e-121 440.7 683 42.8
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.1e-121 440.7 647 45.0
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 6.1e-121 439.1 663 43.1
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 8.0e-121 438.7 648 44.1
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.0e-120 436.4 670 42.8
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 8.8e-120 435.3 621 43.2
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.0e-119 434.1 631 44.5
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 1.3e-118 431.4 610 45.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.7e-118 431.0 650 42.6
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.8e-118 429.5 613 45.7
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.2e-116 424.9 603 44.6
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.2e-116 424.9 630 45.2
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.7e-116 423.7 664 44.0
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.5e-116 423.3 635 44.4
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 5.9e-116 422.5 653 43.8
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.9e-116 422.5 664 43.8
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.0e-115 421.8 641 42.6
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.3e-115 421.4 610 43.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.7e-115 421.0 626 44.2
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 2.9e-115 420.2 677 40.6
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 5.0e-115 419.5 706 41.4
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.5e-115 419.1 687 41.6
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.5e-114 417.9 660 43.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.6e-113 414.5 671 41.3
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.6e-113 414.5 617 44.2
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 2.1e-113 414.1 252 85.3
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.8e-113 413.7 614 44.5
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.7e-113 412.9 683 42.3
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.1e-113 412.5 581 44.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 8.0e-113 412.1 621 44.4
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 4.0e-112 409.8 670 43.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.0e-112 409.8 646 41.8
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 8.8e-112 408.7 646 43.7
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.5e-111 407.9 622 42.9
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.6e-111 407.1 703 39.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 5.7e-111 406.0 658 43.0
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 9.8e-111 405.2 661 43.0
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 2.2e-110 404.1 639 42.6
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.4e-109 401.4 629 42.8
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 4.1e-109 399.8 634 41.8
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.1e-109 399.8 638 42.9
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.4e-109 399.4 609 43.3
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.2e-108 398.3 587 44.5
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.5e-108 396.7 630 41.9
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 7.8e-108 395.6 629 42.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 8.6e-107 392.1 605 42.8
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.5e-106 391.3 664 41.6
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.9e-106 391.0 651 40.9
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-106 391.0 639 43.0
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.3e-106 390.2 630 40.8
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.6e-106 389.4 596 44.3
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 5.6e-106 389.4 625 42.6
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 9.5e-106 388.7 620 41.8
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 5.2e-104 382.9 600 42.8
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 8.9e-104 382.1 641 41.5
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 4.4e-103 379.8 759 37.2
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.7e-102 377.9 645 41.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 7.0e-101 372.5 547 44.1
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-100 371.7 649 40.4
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-98 364.4 714 39.9
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 4.3e-98 363.2 622 41.2
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 4.7e-97 359.8 594 43.6
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 5.2e-96 356.3 647 38.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 6.8e-96 355.9 555 43.6
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.7e-94 351.3 665 39.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.7e-94 351.3 525 43.2
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.4e-93 348.2 651 39.0
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.0e-91 342.0 654 39.3
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 1.5e-90 338.2 666 37.8
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 2.8e-89 334.0 684 37.0
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.3e-88 330.9 685 38.1
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.1e-88 330.5 627 38.1
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 5.2e-88 329.7 509 43.0
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.7e-86 324.7 609 37.4
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.1e-85 322.0 643 35.6
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.4e-85 321.6 553 41.2
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.4e-85 320.9 597 37.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.4e-85 320.9 597 37.7
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.0e-75 288.9 637 35.5
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 6.6e-75 286.2 243 59.7
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 2.4e-72 277.7 581 37.7
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 4.9e-70 270.0 523 39.6
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 4.6e-68 263.5 573 36.3
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 6.0e-68 263.1 192 65.1
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.9e-66 258.1 264 53.4
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 3.3e-66 257.3 511 37.0
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 4.2e-61 240.4 476 39.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.6e-60 238.4 527 36.2
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 8.1e-57 226.1 465 37.0
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.2e-52 212.2 541 34.0
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.3e-50 203.8 215 47.4
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 6.2e-49 199.9 644 30.7
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 8.2e-49 199.5 584 32.9
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.3e-46 192.2 198 48.0
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 6.3e-41 173.3 566 30.7
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.5e-37 161.4 487 31.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.3e-33 149.1 379 35.1
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.5e-31 142.1 106 62.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-30 139.4 106 65.1
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 1.3e-30 139.0 197 44.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.5e-29 134.8 133 49.6
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 9.4e-29 132.9 115 56.5
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 7.9e-28 129.8 157 52.2
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 8.8e-27 126.3 106 59.4
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-24 119.4 139 49.6
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.2e-23 115.9 134 53.7
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.5e-23 115.5 113 48.7
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 4.5e-23 114.0 142 43.7
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.9e-21 108.6 74 63.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 4.2e-21 107.5 146 38.4
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.5e-15 87.4 72 55.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 3.8e-14 84.3 74 52.7
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.6e-12 79.0 66 56.1
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 8.8e-11 73.2 227 33.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 1.5e-10 72.4 78 48.7
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.4e-10 70.9 95 46.3
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 2.2e-09 68.6 59 52.5
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 8.2e-09 66.6 42 71.4
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 8.2e-09 66.6 93 41.9
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-06 59.7 55 49.1
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.7e-06 58.9 48 54.2
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 8.5e-06 56.6 51 54.9


User provided reference genes

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