Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 3.7e-154 548.1 271 100.0
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.1e-86 323.9 275 59.3
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.1e-84 315.8 277 62.1
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 4.1e-84 315.5 275 60.4
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 3.8e-82 308.9 273 59.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 6.5e-82 308.1 274 61.3
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 2.1e-80 303.1 278 58.6
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 1.5e-78 297.0 274 55.8
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.0e-78 296.6 273 56.4
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 2.0e-78 296.6 274 56.6
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 7.4e-78 294.7 275 56.7
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 1.7e-77 293.5 272 55.1
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 2.2e-77 293.1 268 57.8
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 8.2e-77 291.2 278 56.1
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 3.1e-76 289.3 274 54.7
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 3.1e-76 289.3 273 54.6
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 3.1e-76 289.3 273 55.7
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 3.1e-76 289.3 278 56.1
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 4.1e-76 288.9 273 52.7
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 5.3e-76 288.5 271 54.6
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 5.3e-76 288.5 279 55.9
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 7.0e-76 288.1 282 56.4
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 9.1e-76 287.7 278 54.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 9.1e-76 287.7 266 54.5
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 2.0e-75 286.6 280 55.4
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 4.5e-75 285.4 272 53.3
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 4.5e-75 285.4 265 55.5
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 7.7e-75 284.6 271 50.6
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 2.2e-74 283.1 279 53.4
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 2.2e-74 283.1 272 50.7
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.9e-74 282.7 279 53.4
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.5e-74 281.6 266 56.0
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.1e-73 280.8 280 54.3
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.1e-73 280.8 273 55.3
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 3.2e-73 279.3 266 55.6
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 4.2e-73 278.9 278 54.0
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 7.2e-73 278.1 281 53.4
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 2.1e-72 276.6 272 54.0
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 2.1e-72 276.6 274 54.7
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 2.7e-72 276.2 279 51.3
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.7e-72 275.4 275 50.5
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.7e-72 275.4 275 50.5
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 4.7e-72 275.4 279 53.8
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 6.1e-72 275.0 277 51.6
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 8.0e-72 274.6 269 53.5
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 8.0e-72 274.6 269 53.2
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 8.0e-72 274.6 271 53.1
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 1.0e-71 274.2 272 52.9
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-71 273.9 273 52.4
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 1.8e-71 273.5 272 52.9
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.8e-71 273.5 277 52.3
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.3e-71 273.1 266 55.6
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 2.3e-71 273.1 269 55.4
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 2.3e-71 273.1 269 52.0
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.3e-71 273.1 279 53.0
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.0e-71 272.7 278 51.1
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 4.0e-71 272.3 266 53.4
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 1.2e-70 270.8 277 54.2
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 1.5e-70 270.4 266 53.4
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 5.7e-70 268.5 291 50.9
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.3e-69 267.3 264 54.9
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 1.3e-69 267.3 260 55.8
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 1.3e-69 267.3 274 51.5
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 6.3e-69 265.0 309 47.6
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 2.4e-68 263.1 261 51.7
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 3.1e-68 262.7 248 58.1
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 5.3e-68 261.9 267 52.1
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.0e-67 260.0 236 56.8
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 2.0e-67 260.0 274 51.5
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 2.0e-67 260.0 271 48.0
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 7.7e-67 258.1 271 48.7
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 7.2e-65 251.5 291 46.4
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 9.4e-65 251.1 220 56.8
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 6.1e-64 248.4 265 51.3
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 1.0e-63 247.7 268 53.7
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 5.2e-63 245.4 227 56.4
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 3.4e-62 242.7 232 55.6
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 3.4e-62 242.7 198 59.1
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 7.5e-62 241.5 201 60.2
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 8.3e-61 238.0 263 46.8
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 1.1e-60 237.7 269 48.3
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 9.1e-60 234.6 229 54.1
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.2e-59 234.2 198 58.1
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.3e-57 226.1 268 46.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.8e-54 214.5 283 43.8
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.9e-51 205.3 135 67.4
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.1e-48 196.8 213 50.2
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.0e-47 194.5 287 39.0
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.8e-47 193.7 274 44.5
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 5.8e-46 188.7 210 49.5
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 9.8e-46 188.0 198 51.5
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.7e-45 186.0 211 48.8
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.7e-43 179.9 266 41.7
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.3e-42 177.6 208 50.0
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.7e-42 177.2 179 50.3
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 8.6e-42 174.9 195 50.8
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.8e-39 167.2 295 40.7
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 2.0e-38 163.7 232 45.7
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 2.7e-35 153.3 144 54.9
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 5.1e-34 149.1 272 36.4
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 1.8e-31 140.6 166 45.2
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 2.0e-30 137.1 257 34.6
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 4.4e-30 136.0 172 44.8
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.7e-29 134.0 167 48.5
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 5.4e-28 129.0 141 48.9
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 7.1e-28 128.6 105 52.4
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.2e-27 127.9 182 41.8
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 6.6e-26 122.1 171 47.4
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 6.8e-23 112.1 173 36.4
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.6e-19 100.9 70 65.7
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.1e-18 95.9 90 53.3
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 4.3e-17 92.8 174 33.9
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 2.1e-16 90.5 212 34.4
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 3.6e-16 89.7 137 38.7
CBR_g45547 Chara braunii HOM05D003201 ORTHO05D008805 2.9e-13 80.1 268 30.6
Sed0004381 Sechium edule HOM05D007105 ORTHO05D009304 2.8e-08 63.5 215 26.0


User provided reference genes

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