Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 0.0e+00 1300.4 707 100.0
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 0.0e+00 1087.8 707 86.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.2e-167 594.3 807 47.8
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.1e-160 569.7 796 46.6
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 2.6e-159 566.6 808 47.6
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 9.1e-152 541.6 765 46.7
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.0e-151 540.4 767 47.1
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.9e-150 536.6 768 47.1
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 6.5e-150 535.4 796 45.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.4e-147 527.7 777 45.6
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 6.8e-147 525.4 711 48.8
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.4e-146 523.1 794 46.2
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.7e-145 520.8 775 45.3
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.2e-145 520.4 797 44.0
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 5.4e-144 515.8 764 45.3
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.7e-143 513.5 767 47.1
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 3.5e-143 513.1 797 45.2
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.5e-143 512.7 804 45.6
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.5e-141 506.9 774 45.0
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 4.2e-141 506.1 770 45.6
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 7.2e-141 505.4 806 44.4
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.2e-140 504.6 774 44.7
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 8.0e-140 501.9 715 46.7
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 6.8e-139 498.8 744 46.8
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.5e-138 497.7 782 43.7
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 4.4e-138 496.1 778 43.8
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 2.8e-137 493.4 759 44.4
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.4e-136 490.3 787 44.7
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.1e-136 490.0 718 45.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.0e-134 485.0 749 45.1
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.3e-134 484.6 780 43.5
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 8.6e-134 481.9 785 43.6
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-133 479.9 789 43.9
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 3.3e-133 479.9 760 44.5
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 5.6e-133 479.2 768 43.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.8e-132 476.9 786 43.3
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 8.0e-132 475.3 769 43.3
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.0e-131 474.9 780 42.9
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.0e-131 474.9 784 43.2
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.4e-131 474.6 809 42.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.3e-131 473.8 764 43.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 5.2e-131 472.6 801 43.1
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 5.2e-131 472.6 777 43.8
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 2.6e-130 470.3 747 43.8
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.4e-130 469.9 783 43.0
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.4e-130 469.9 684 45.9
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 9.8e-130 468.4 722 44.2
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.3e-129 468.0 761 43.9
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.9e-129 466.8 762 42.4
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 8.3e-129 465.3 771 43.5
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 8.3e-129 465.3 733 45.0
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.4e-128 464.5 674 46.7
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.9e-128 464.2 741 44.7
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.2e-128 463.4 788 43.3
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 7.0e-128 462.2 775 42.6
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-126 458.0 790 42.4
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.7e-126 457.6 747 44.0
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.3e-125 453.4 743 43.7
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.7e-124 449.5 701 44.2
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 8.0e-124 448.7 727 43.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.1e-123 448.4 762 42.4
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.8e-123 447.6 796 42.1
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.3e-123 447.2 763 42.5
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.0e-123 446.4 735 43.4
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 4.0e-123 446.4 782 42.2
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.9e-123 445.3 516 53.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 1.2e-122 444.9 764 42.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 4.4e-122 443.0 771 42.3
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 7.5e-122 442.2 706 44.2
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.7e-121 441.0 737 42.6
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 2.2e-121 440.7 779 41.5
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.9e-121 440.3 762 42.3
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 4.9e-121 439.5 761 42.6
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.1e-120 438.3 763 42.3
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.1e-120 438.3 763 42.3
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.1e-120 438.3 825 40.6
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.9e-120 437.6 741 43.5
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 4.1e-120 436.4 804 41.3
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 9.2e-120 435.3 792 41.9
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.6e-119 433.0 712 43.8
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 4.6e-119 433.0 734 43.9
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.1e-117 428.3 742 43.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 5.6e-117 426.0 774 41.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.6e-116 423.3 787 40.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.2e-115 419.5 741 41.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 8.9e-115 418.7 795 39.6
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 8.9e-115 418.7 732 41.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.2e-112 408.7 760 40.5
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 6.6e-110 402.5 789 39.5
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.1e-109 401.7 688 42.4
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 9.5e-109 398.7 748 39.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 6.2e-108 396.0 774 38.2
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.5e-106 391.3 855 37.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.5e-106 391.3 756 40.6
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.8e-106 389.4 752 40.2
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.1e-104 385.2 755 38.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.9e-104 384.4 507 50.1
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.2e-104 383.6 690 40.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 4.2e-104 383.3 735 40.3
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 9.2e-104 382.1 761 38.4
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.2e-103 381.7 735 39.9
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 4.6e-103 379.8 748 40.0
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 4.6e-103 379.8 748 40.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.6e-103 379.8 748 40.0
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.1e-101 375.2 680 40.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.5e-101 374.8 757 38.3
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.9e-101 374.4 618 42.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.1e-100 370.9 650 42.9
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.1e-99 367.1 351 60.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.0e-98 364.4 745 37.9
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-98 364.0 753 39.6
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.3e-97 361.7 723 37.6
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 6.4e-97 359.4 760 39.1
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 8.4e-97 359.0 370 56.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.2e-96 356.7 598 43.0
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 9.3e-96 355.5 755 38.1
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-95 355.1 621 42.0
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-95 354.8 735 37.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.6e-95 354.8 774 37.3
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 7.8e-95 352.4 746 38.1
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.0e-94 352.1 616 41.7
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.1e-94 349.7 740 37.2
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.9e-93 347.8 616 41.4
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.6e-93 346.3 759 36.4
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 2.1e-92 344.4 681 38.0
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 2.8e-92 344.0 770 36.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.9e-91 339.3 600 39.8
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-90 337.4 663 38.9
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 4.5e-90 336.7 760 36.7
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.3e-89 335.1 768 36.1
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.9e-89 334.0 692 37.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 6.0e-87 326.2 373 55.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-86 325.1 758 35.5
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 5.3e-83 313.2 466 46.4
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 5.8e-82 309.7 756 36.4
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.5e-80 304.3 831 33.7
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-72 278.9 653 37.2
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 5.5e-64 250.0 739 31.3
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 4.1e-59 233.8 610 33.1
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 3.8e-57 227.3 650 33.1
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 2.1e-55 221.5 344 45.1
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 9.7e-53 212.6 328 46.0
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-51 208.8 250 52.8
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 3.2e-48 197.6 347 37.8
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 4.1e-43 180.6 400 39.5
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 4.7e-39 167.2 192 55.2
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.7e-34 149.8 359 38.2
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.9e-32 145.2 377 32.9
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.6e-31 142.1 141 57.4
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 3.4e-29 134.4 183 49.7
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 4.4e-29 134.0 172 51.2
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.5e-26 124.4 135 54.8
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 5.0e-17 94.0 151 39.7
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 6.6e-17 93.6 119 45.4
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 1.4e-14 85.9 274 28.8
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 6.8e-14 83.6 193 34.7
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 8.9e-14 83.2 203 31.0
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.2e-12 78.6 62 67.7
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-09 69.3 140 33.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 3.9e-09 67.8 216 31.0
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 7.3e-08 63.5 125 36.0
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.6e-07 62.4 83 45.8
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 8.0e-07 60.1 265 30.9


User provided reference genes

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