Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.3e-123 445.7 243 100.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.8e-73 278.9 205 75.6
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.8e-70 270.0 194 71.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.7e-70 268.1 200 69.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.3e-69 265.4 208 66.8
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.2e-68 263.1 207 65.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.8e-68 261.9 197 69.0
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-67 260.8 194 67.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.1e-67 260.8 204 67.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.1e-67 260.8 196 68.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-67 260.4 197 68.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.4e-67 260.4 198 67.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.4e-67 259.6 191 70.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.4e-67 259.6 212 63.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 5.3e-67 258.5 197 67.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.3e-67 258.5 202 65.8
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.3e-67 258.5 199 67.8
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 6.9e-67 258.1 212 62.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.9e-67 258.1 212 62.7
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.2e-66 257.3 196 67.3
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.5e-66 256.9 210 65.2
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.5e-66 256.9 195 67.7
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.5e-66 256.9 206 64.1
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.5e-66 256.9 206 64.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.5e-66 256.9 190 70.0
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.5e-66 256.9 195 67.7
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.0e-66 256.5 200 67.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.0e-66 256.5 202 65.3
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.0e-66 256.5 212 62.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.0e-66 256.5 200 64.5
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.6e-66 256.1 197 66.5
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.6e-66 256.1 196 67.9
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.4e-66 255.8 198 66.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.4e-66 255.8 191 68.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.4e-66 255.8 202 64.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.4e-66 255.8 194 66.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.4e-66 255.8 204 64.7
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.4e-66 255.8 195 65.1
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.5e-66 255.4 212 62.3
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.5e-66 255.4 212 62.3
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 5.9e-66 255.0 198 68.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.9e-66 255.0 204 64.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.9e-66 255.0 199 67.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.9e-66 255.0 204 67.6
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.7e-66 254.6 197 66.5
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.0e-65 254.2 199 66.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.0e-65 254.2 196 67.3
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.3e-65 253.8 197 67.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.7e-65 253.4 190 68.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.7e-65 253.4 197 67.5
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.2e-65 253.1 204 64.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.9e-65 252.7 187 70.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.9e-65 252.7 195 68.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.8e-65 252.3 204 64.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.8e-65 252.3 195 68.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.8e-65 252.3 202 63.4
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 6.5e-65 251.5 201 66.2
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.5e-65 251.5 213 61.5
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 6.5e-65 251.5 204 63.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.1e-64 250.8 198 65.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.4e-64 250.4 216 63.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-64 250.0 194 65.5
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.2e-64 249.2 194 65.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 5.5e-64 248.4 199 64.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 7.2e-64 248.1 203 63.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 9.4e-64 247.7 195 65.1
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.2e-63 247.3 201 62.7
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.6e-63 246.9 227 65.2
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-63 246.5 185 68.6
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.7e-63 246.1 191 68.6
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.6e-63 245.7 196 65.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.6e-63 245.4 200 62.5
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 4.6e-63 245.4 197 63.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.0e-62 244.2 198 63.1
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.8e-62 243.4 196 64.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.8e-62 243.4 196 64.8
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.8e-62 243.4 204 58.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.3e-62 243.0 201 61.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 3.0e-62 242.7 198 65.7
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 3.0e-62 242.7 198 65.7
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.0e-62 242.7 207 61.8
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.0e-62 242.7 195 64.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 3.0e-62 242.7 193 64.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.9e-62 242.3 206 61.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 5.1e-62 241.9 195 66.2
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.7e-62 241.5 200 62.0
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.1e-61 240.7 201 60.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.5e-61 239.6 198 61.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.3e-61 239.2 182 65.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.7e-61 238.4 192 62.5
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.1e-59 234.2 209 59.3
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-59 232.6 185 68.1
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 3.1e-59 232.6 196 60.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 9.1e-59 231.1 189 61.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-58 230.7 185 67.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 2.0e-58 229.9 217 57.1
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.6e-58 229.6 194 61.3
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.3e-57 227.3 195 60.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.2e-57 226.5 205 59.5
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.9e-57 226.1 191 61.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.8e-57 225.7 192 62.0
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.8e-57 225.7 191 61.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.4e-56 223.8 200 59.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.4e-56 223.8 196 60.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.5e-56 223.0 192 61.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.5e-56 223.0 197 60.4
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.5e-56 223.0 197 60.4
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 4.2e-56 222.2 192 61.5
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 4.2e-56 222.2 196 61.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 7.2e-56 221.5 197 60.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 7.2e-56 221.5 185 61.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.2e-55 220.7 192 60.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-55 220.3 197 59.4
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.6e-55 220.3 197 59.4
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.1e-55 219.9 195 60.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.6e-55 219.2 197 59.4
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-54 217.6 198 58.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-54 217.6 196 59.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-54 217.6 198 58.1
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.0e-54 217.6 198 58.1
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-54 217.2 197 58.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.4e-54 217.2 195 58.5
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 6.7e-54 214.9 195 58.5
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.0e-49 201.1 195 56.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 6.5e-49 198.4 186 53.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.8e-46 190.3 135 68.1
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 3.9e-46 189.1 162 63.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 2.2e-44 183.3 176 57.4
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-44 182.6 165 60.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.8e-44 182.2 201 55.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.4e-43 179.9 205 50.2
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.5e-37 160.6 116 65.5
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.7e-36 156.0 206 46.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.5e-33 145.2 113 56.6
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 4.2e-32 142.5 114 69.3
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.0e-30 136.0 94 67.0
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.6e-29 133.3 104 57.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 8.3e-28 128.3 93 64.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.2e-14 82.4 65 66.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 4.3e-08 62.8 49 57.1


User provided reference genes

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