Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.1e-124 449.1 246 100.0
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.3e-49 199.9 247 51.8
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 5.0e-49 198.7 264 47.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-48 197.6 257 49.4
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 3.6e-47 192.6 250 48.4
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.1e-46 189.5 256 46.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 8.9e-46 188.0 192 62.5
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.6e-45 186.4 246 47.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.6e-45 186.4 250 49.2
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.4e-45 186.0 258 50.4
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.8e-45 185.3 251 45.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 9.8e-45 184.5 251 45.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.7e-44 183.7 251 45.4
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 8.3e-44 181.4 256 45.3
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.1e-43 181.0 255 46.3
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.1e-43 181.0 251 49.4
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-43 180.6 248 50.4
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.4e-43 180.6 247 50.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.1e-43 179.1 252 46.8
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.1e-43 178.3 255 46.3
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 7.1e-43 178.3 254 48.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 9.2e-43 177.9 233 46.8
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 9.2e-43 177.9 233 46.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.2e-43 177.9 251 48.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.2e-42 177.6 241 46.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.6e-42 177.2 249 49.4
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.6e-42 177.2 163 57.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.7e-42 176.4 251 47.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 3.5e-42 176.0 243 42.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.5e-42 176.0 252 44.0
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 4.6e-42 175.6 225 50.7
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 6.0e-42 175.3 246 48.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.8e-42 174.9 246 45.1
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 7.8e-42 174.9 251 45.4
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.0e-41 174.5 246 45.1
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-41 174.1 244 47.1
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.3e-41 173.3 236 44.9
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.3e-41 173.3 245 44.1
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.0e-41 172.9 255 44.7
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 3.0e-41 172.9 243 45.7
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.9e-41 172.6 269 45.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.1e-41 172.2 246 42.7
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 6.6e-41 171.8 252 46.0
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.6e-41 171.8 269 42.4
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.6e-41 171.4 247 45.7
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 8.6e-41 171.4 245 46.1
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 8.6e-41 171.4 249 47.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.5e-40 170.6 252 46.4
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.3e-40 169.5 242 47.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.3e-40 169.1 249 44.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.3e-40 169.1 222 46.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 4.3e-40 169.1 247 46.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.3e-40 169.1 252 46.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 5.6e-40 168.7 241 44.4
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.6e-40 168.7 244 45.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 5.6e-40 168.7 266 44.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 7.3e-40 168.3 240 45.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.2e-39 167.5 249 44.6
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.6e-39 167.2 265 45.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.8e-39 166.4 172 52.9
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.8e-39 166.4 247 46.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.8e-39 166.4 256 42.2
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 3.6e-39 166.0 242 47.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 6.2e-39 165.2 243 43.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 6.2e-39 165.2 270 44.8
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-38 164.5 258 41.1
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.4e-38 164.1 249 44.6
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.8e-38 163.7 271 40.2
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 2.3e-38 163.3 249 44.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 4.0e-38 162.5 264 39.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 4.0e-38 162.5 156 54.5
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.0e-38 162.5 256 42.2
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 5.2e-38 162.2 260 42.7
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 5.2e-38 162.2 249 42.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 6.8e-38 161.8 263 43.3
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.2e-37 161.0 252 43.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.0e-37 160.2 259 41.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.6e-37 159.8 262 42.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.6e-37 159.8 249 43.8
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 4.4e-37 159.1 249 43.0
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.4e-37 159.1 245 41.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.8e-37 158.7 251 41.4
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.9e-37 157.9 265 40.8
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-36 157.5 257 43.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-36 157.5 253 42.3
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.3e-36 157.5 264 42.0
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-36 157.5 239 41.4
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 1.7e-36 157.1 267 42.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.2e-36 156.8 270 43.7
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.9e-36 156.4 259 42.5
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.9e-36 156.4 256 40.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 3.8e-36 156.0 244 42.2
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.8e-36 156.0 250 44.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.9e-36 155.6 272 39.3
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 4.9e-36 155.6 272 39.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 4.9e-36 155.6 255 42.4
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 6.4e-36 155.2 167 46.7
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 8.4e-36 154.8 262 40.8
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-35 154.5 271 39.1
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-35 154.5 234 44.0
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-35 154.5 237 41.4
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-35 154.1 268 38.1
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-35 154.1 255 39.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-35 153.7 249 41.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.9e-35 153.7 268 38.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.1e-35 152.5 251 40.6
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.1e-35 152.5 255 39.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.1e-35 151.8 256 39.5
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 9.2e-35 151.4 253 40.3
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.7e-34 149.8 243 46.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.5e-34 149.4 240 44.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 4.6e-34 149.1 171 52.0
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.3e-33 147.5 241 42.7
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.3e-33 147.5 253 42.3
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 3.9e-33 146.0 315 36.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 5.6e-32 142.1 170 49.4
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 9.6e-32 141.4 244 39.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.8e-31 139.8 280 37.1
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.4e-30 137.5 185 47.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.1e-30 136.3 247 40.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.2e-29 134.4 233 39.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.9e-29 131.3 259 34.4
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.1e-27 125.2 153 44.4
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.3e-25 120.9 142 48.6
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.5e-24 116.7 227 35.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.6e-24 115.5 211 37.0
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.9e-20 103.2 377 30.0
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.9e-19 100.5 248 37.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 6.7e-17 92.0 124 41.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.9e-16 90.5 97 43.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.9e-16 90.5 133 43.6
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.6e-16 89.0 67 64.2
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.6e-15 87.4 99 47.5
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 4.8e-15 85.9 131 41.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 8.1e-15 85.1 182 34.6
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-14 84.7 60 63.3
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.2e-13 81.3 157 41.4
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.5e-13 80.9 125 46.4
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.7e-12 77.4 246 26.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-12 77.0 159 34.6
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.2e-10 71.2 131 43.5
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.8e-09 67.4 50 52.0
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.8e-09 67.4 50 52.0
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.0e-09 66.6 124 34.7
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 7.4e-08 62.0 122 40.2
CDE05G2638 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.8e-07 59.3 32 90.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 4.8e-07 59.3 57 54.4


User provided reference genes

Program Settings