Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.7e-221 770.4 393 100.0
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.8e-161 570.9 403 77.2
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.2e-31 141.7 197 43.1
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 5.4e-29 132.9 191 37.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 7.1e-29 132.5 184 40.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.3e-27 127.5 182 40.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.1e-27 126.3 191 35.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 8.7e-27 125.6 190 37.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.5e-26 124.0 186 38.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.6e-25 120.2 199 35.7
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.6e-25 120.2 180 39.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 6.2e-25 119.4 192 36.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.4e-24 117.5 198 37.9
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 3.1e-24 117.1 189 36.0
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.5e-23 114.8 199 36.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.0e-23 114.4 192 35.9
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.4e-23 113.6 188 35.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.4e-23 113.6 186 35.5
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.3e-22 111.7 188 34.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.3e-22 111.7 210 33.8
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.2e-22 110.9 193 35.2
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.9e-22 110.5 204 35.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.8e-22 110.2 186 35.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.4e-22 109.4 192 36.5
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.1e-21 108.6 212 33.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.4e-21 108.2 197 33.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.4e-21 107.5 203 37.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.2e-21 107.1 177 34.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 5.4e-21 106.3 201 32.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.2e-20 105.1 202 35.1
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.2e-20 105.1 195 32.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.7e-20 104.0 182 35.2
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.5e-20 103.6 206 34.5
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.6e-20 103.2 187 35.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.6e-20 103.2 207 33.8
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 6.0e-20 102.8 178 34.8
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.0e-20 102.8 194 33.5
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.0e-19 102.1 190 30.5
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-19 101.7 216 30.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.8e-19 101.3 210 32.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-19 101.3 195 30.8
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.8e-19 101.3 185 36.8
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-19 100.9 210 34.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.9e-19 100.1 182 32.4
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.1e-19 99.8 210 33.3
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.1e-19 99.8 204 33.8
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.1e-19 99.8 191 33.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.7e-19 99.4 186 32.3
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 6.7e-19 99.4 202 32.7
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 8.7e-19 99.0 181 33.7
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.7e-19 99.0 214 33.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.1e-18 98.6 181 34.3
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.1e-18 98.6 218 30.3
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.5e-18 98.2 187 33.7
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.5e-18 97.4 193 29.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.3e-18 97.1 192 33.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 7.4e-18 95.9 181 32.6
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 7.4e-18 95.9 210 33.3
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 7.4e-18 95.9 184 32.6
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 9.6e-18 95.5 184 31.0
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 9.6e-18 95.5 184 31.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-17 94.7 184 32.1
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.8e-17 94.0 184 32.1
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-17 94.0 184 32.1
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.8e-17 94.0 184 32.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.8e-17 94.0 178 32.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-17 94.0 190 31.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.7e-17 93.6 209 32.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 3.7e-17 93.6 217 32.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.8e-17 93.2 225 30.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.2e-17 92.8 210 29.5
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 6.2e-17 92.8 185 31.9
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.1e-17 92.4 184 34.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.1e-16 92.0 212 28.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.4e-16 91.7 174 30.5
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-16 91.7 177 30.5
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-16 91.7 213 30.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.8e-16 91.3 190 28.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.4e-16 90.9 188 29.3
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.3e-16 89.7 161 32.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.3e-16 89.7 183 31.7
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-16 89.4 178 31.5
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.9e-16 89.4 211 31.3
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 6.9e-16 89.4 190 30.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.2e-15 88.6 185 31.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.5e-15 88.2 184 31.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.6e-15 87.4 185 30.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 4.5e-15 86.7 212 29.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.3e-14 85.1 214 29.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.2e-14 84.3 177 33.9
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.2e-14 84.3 177 33.9
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.9e-14 84.0 220 28.6
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 3.8e-14 83.6 200 30.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.4e-14 82.8 192 33.3
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.4e-14 82.8 177 33.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.1e-13 82.0 163 33.1
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-13 81.3 180 32.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-13 81.3 180 32.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.4e-13 80.9 203 30.0
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.1e-13 79.3 169 29.6
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.6e-12 78.2 180 32.2
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.1e-12 77.8 217 28.1
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.7e-12 77.4 184 30.4
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-12 77.0 212 27.4
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.5e-12 77.0 176 32.4
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.6e-12 76.6 156 31.4
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-12 75.9 191 30.9
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.9e-12 75.9 184 29.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-11 75.5 163 29.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.0e-11 75.5 204 31.4
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.0e-11 75.5 165 32.1
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-11 75.1 183 32.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-11 75.1 156 34.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-11 75.1 156 34.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.3e-11 75.1 208 25.5
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.0e-11 73.9 190 30.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.0e-11 73.9 209 28.2
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 3.0e-11 73.9 230 25.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.0e-11 73.9 197 27.9
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.9e-11 73.6 185 30.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.9e-11 73.6 193 31.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 5.1e-11 73.2 186 30.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 5.1e-11 73.2 186 30.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 5.1e-11 73.2 186 30.1
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 5.1e-11 73.2 182 30.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.1e-11 73.2 202 29.2
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.1e-11 73.2 79 46.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 8.7e-11 72.4 152 32.2
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 8.7e-11 72.4 152 32.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-10 71.6 186 28.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.5e-10 70.9 182 28.6
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.5e-10 70.9 202 27.7
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.3e-10 70.1 175 31.4
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 5.6e-10 69.7 169 30.2
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 5.6e-10 69.7 169 30.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 5.6e-10 69.7 204 27.5
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 7.4e-10 69.3 163 32.5
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 7.4e-10 69.3 202 29.7
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 7.4e-10 69.3 222 28.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.6e-10 68.9 166 29.5
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.3e-09 68.6 208 29.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.1e-09 67.8 214 29.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-09 67.0 164 30.5
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.1e-08 65.5 88 46.6
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.4e-08 65.1 215 27.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.1e-08 63.9 71 39.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.1e-08 63.9 200 26.0
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.2e-07 62.0 158 28.5
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.5e-07 61.6 235 25.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.9e-06 57.4 216 26.9
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.8e-06 57.0 76 35.5
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.8e-06 57.0 169 30.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.9e-06 56.6 176 27.3
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.5e-06 56.2 75 41.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 6.5e-06 56.2 169 29.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.5e-06 56.2 201 25.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 8.4e-06 55.8 180 26.1


User provided reference genes

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