Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 6.5e-128 460.7 226 100.0
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.1e-74 281.2 228 64.5
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-72 276.9 229 62.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.5e-71 273.5 229 61.6
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.4e-69 266.9 229 59.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.0e-68 263.1 229 57.2
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.8e-68 261.5 229 59.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 7.6e-68 261.2 226 59.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.6e-68 261.2 234 58.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 9.9e-68 260.8 229 59.4
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 9.9e-68 260.8 229 57.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 226 59.3
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.2e-67 259.6 229 58.5
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.8e-67 258.8 227 58.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 4.9e-67 258.5 230 55.2
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 6.4e-67 258.1 231 55.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 6.4e-67 258.1 228 57.0
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.4e-67 257.7 231 57.6
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.4e-67 257.7 231 57.6
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-66 257.3 227 56.8
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.2e-66 255.4 231 57.1
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.2e-66 255.4 228 56.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 7.1e-66 254.6 229 57.6
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.6e-65 253.4 229 57.6
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.6e-65 253.4 230 55.7
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.1e-65 253.1 233 57.9
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.1e-65 253.1 229 55.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.7e-65 252.7 229 58.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.7e-65 252.7 230 55.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.5e-65 252.3 231 58.0
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-64 250.4 230 55.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.3e-64 249.6 231 55.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.3e-64 249.6 230 54.8
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.0e-64 249.2 232 55.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.1e-64 248.4 230 54.8
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.7e-64 248.1 231 56.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 8.7e-64 247.7 227 55.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.1e-63 247.3 225 56.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.3e-63 245.7 226 56.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.3e-63 245.4 229 54.6
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 5.6e-63 245.0 232 53.9
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 7.4e-63 244.6 226 57.5
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 7.4e-63 244.6 229 56.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.3e-62 243.8 231 55.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.8e-62 241.9 231 54.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 8.1e-62 241.1 228 56.6
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.8e-61 240.0 233 55.4
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.4e-61 239.6 233 53.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.1e-61 239.2 235 53.6
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.1e-61 239.2 204 56.4
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.0e-61 238.8 231 54.5
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.0e-61 238.8 221 56.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.3e-61 238.4 230 53.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.0e-60 236.5 232 51.7
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.4e-60 235.7 205 56.1
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.8e-60 235.0 226 55.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.8e-60 235.0 221 55.7
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.3e-59 233.8 226 54.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.9e-59 232.6 242 51.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.4e-59 231.1 233 51.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 8.4e-59 231.1 229 55.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-58 230.7 226 51.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.9e-58 229.9 229 51.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.5e-58 229.6 225 53.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 3.2e-58 229.2 226 54.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 4.2e-58 228.8 233 54.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.2e-58 228.8 245 50.6
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.2e-58 228.8 229 54.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 5.5e-58 228.4 229 53.3
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 7.1e-58 228.0 226 53.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 9.3e-58 227.6 227 54.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.2e-57 227.3 231 53.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.2e-57 227.3 225 52.0
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.6e-57 226.9 165 63.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.1e-57 226.5 226 52.7
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.7e-57 226.1 226 52.7
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.7e-57 226.1 229 53.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.9e-57 224.6 225 52.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.0e-56 224.2 137 72.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-56 223.8 224 54.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.8e-56 223.4 229 52.8
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.1e-56 221.9 141 70.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 5.1e-56 221.9 229 51.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 8.7e-56 221.1 229 52.0
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.1e-55 220.7 204 54.4
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.5e-55 220.3 225 51.1
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.5e-55 220.3 223 51.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.5e-55 220.3 228 50.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.9e-55 219.9 144 68.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.5e-55 219.5 231 48.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-55 219.2 229 50.7
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.7e-55 218.4 227 51.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.6e-54 216.9 227 51.1
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-54 216.9 220 52.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.6e-54 216.9 229 52.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.8e-54 216.1 223 50.2
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.2e-54 214.5 228 51.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.8e-53 213.4 225 50.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.4e-53 213.0 228 52.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.4e-53 213.0 188 54.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 4.1e-53 212.2 172 59.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 4.1e-53 212.2 172 59.9
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 6.9e-53 211.5 227 51.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-52 210.7 227 51.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-52 210.3 229 48.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.5e-52 210.3 155 61.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-52 209.9 168 58.3
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.4e-52 209.1 160 65.0
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 4.5e-52 208.8 168 57.7
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 4.5e-52 208.8 156 64.7
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 5.8e-52 208.4 168 57.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-52 208.4 168 57.7
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-52 208.4 160 62.5
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-52 208.4 168 57.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 5.8e-52 208.4 168 57.7
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.8e-52 208.4 227 46.7
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.8e-52 208.4 229 48.5
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 5.8e-52 208.4 227 48.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.6e-52 208.0 231 47.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.6e-52 208.0 211 52.1
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 7.6e-52 208.0 227 48.5
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.7e-51 206.8 157 65.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.7e-51 206.8 190 54.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-51 206.1 222 49.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.9e-51 206.1 157 64.3
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 8.4e-51 204.5 137 65.0
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.6e-49 200.3 179 54.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.5e-49 199.1 181 53.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 4.6e-49 198.7 240 45.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.6e-49 198.7 130 66.9
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.0e-48 197.6 195 55.4
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.3e-48 197.2 206 51.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.3e-48 197.2 208 50.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.8e-48 196.8 194 54.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.8e-48 196.8 211 46.9
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.0e-48 196.1 222 48.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 3.9e-48 195.7 190 51.1
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 5.1e-48 195.3 224 48.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.1e-47 194.1 157 61.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.5e-47 193.0 172 52.3
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.5e-47 193.0 211 46.4
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.3e-47 192.6 227 48.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.7e-47 191.8 224 46.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.6e-46 190.3 225 47.1
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.2e-46 189.9 258 45.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 4.8e-46 188.7 226 50.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.8e-46 188.7 230 46.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.4e-45 187.2 224 46.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.4e-45 187.2 136 61.8
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.4e-45 186.4 232 46.1
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-45 186.4 213 47.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.6e-44 183.0 224 45.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 8.5e-43 177.9 189 48.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.1e-42 177.6 193 50.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.1e-42 177.6 229 45.0
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.5e-42 176.4 159 52.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-41 173.3 220 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 7.9e-41 171.4 183 48.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.8e-40 170.2 122 63.9
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 8.8e-40 167.9 132 63.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.7e-39 165.2 122 60.7
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.1e-37 161.0 167 46.1
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.1e-37 159.1 225 41.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.9e-37 158.3 274 38.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.1e-37 157.9 227 44.9
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 7.7e-36 154.8 107 63.6
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.3e-35 154.1 117 58.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.2e-33 147.5 168 50.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-32 142.5 227 42.3
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.8e-30 136.3 78 71.8
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.3e-29 132.1 85 71.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-27 126.3 153 47.1
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.7e-25 119.0 167 42.5
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.7e-25 119.0 167 42.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.3e-19 100.9 160 38.8
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-19 100.1 59 69.5
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-15 87.8 50 68.0
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 7.5e-15 85.1 52 69.2


User provided reference genes

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