Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1624 Ceratophyllum demersum HOM05D002960 ORTHO05D024096 9.4e-49 196.8 120 100.0
CDE04G1460 Ceratophyllum demersum HOM05D002960 ORTHO05D003632 4.2e-25 118.2 95 74.7
CDE02G1775 Ceratophyllum demersum HOM05D002960 ORTHO05D003632 6.1e-24 114.4 88 78.4
Actinidia05449 Actinidia chinensis HOM05D002960 ORTHO05D003632 6.5e-18 94.4 54 72.2
Actinidia08427 Actinidia chinensis HOM05D002960 ORTHO05D003632 8.5e-18 94.0 54 72.2
Hma1.2p1_0084F.1_g043400 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 1.1e-17 93.6 54 74.1
Hund04797 Selenicereus undatus HOM05D002960 ORTHO05D003632 5.5e-17 91.3 54 70.4
ATR0564G109 Amborella trichopoda HOM05D002960 ORTHO05D003632 1.2e-16 90.1 53 69.8
CANSAT11G1379 Cannabis sativa HOM05D002960 ORTHO05D003632 2.1e-16 89.4 54 66.7
TPR.G20789 Trifolium pratense HOM05D002960 ORTHO05D003632 2.1e-16 89.4 54 66.7
Medtr2g044580 Medicago truncatula HOM05D002960 ORTHO05D003632 2.7e-16 89.0 54 66.7
Sed0004875 Sechium edule HOM05D002960 ORTHO05D003632 2.7e-16 89.0 52 73.1
Ca_02287_v3 Cicer arietinum L. HOM05D002960 ORTHO05D003632 3.6e-16 88.6 54 66.7
Nn1g01680 Nelumbo nucifera HOM05D002960 ORTHO05D003632 3.6e-16 88.6 54 68.5
Ah.05g171480 Amaranthus hybridus HOM05D002960 ORTHO05D003632 4.7e-16 88.2 54 64.8
CSS0012044 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 4.7e-16 88.2 54 66.7
CsaV3_3G017580 Cucumis sativus L. HOM05D002960 ORTHO05D003632 4.7e-16 88.2 52 71.2
Glyma.09G075400 Glycine max HOM05D002960 ORTHO05D003632 4.7e-16 88.2 52 67.3
Lj2A132T53 Lonicera japonica HOM05D002960 ORTHO05D003632 4.7e-16 88.2 54 68.5
Hund11709 Selenicereus undatus HOM05D002960 ORTHO05D003632 4.7e-16 88.2 54 64.8
ClCG05G008490 Citrullus lanatus HOM05D002960 ORTHO05D003632 6.1e-16 87.8 52 71.2
Ah.15g089750 Amaranthus hybridus HOM05D002960 ORTHO05D003632 1.0e-15 87.0 54 64.8
Ah.15g089760 Amaranthus hybridus HOM05D002960 ORTHO05D003632 1.0e-15 87.0 54 64.8
Ah.15g089770 Amaranthus hybridus HOM05D002960 ORTHO05D003632 1.0e-15 87.0 54 64.8
Lalb_Chr11g0073951 Lupinus albus HOM05D002960 ORTHO05D003632 1.4e-15 86.7 52 69.2
VMungo1309G1262 Vigna mungo HOM05D002960 ORTHO05D003632 1.4e-15 86.7 52 67.3
arahy.Tifrunner.gnm1.ann1.0GK98G Arachis hypogaea HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 64.8
arahy.Tifrunner.gnm1.ann1.LVPM4A Arachis hypogaea HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 64.8
EL10Ac3g05404 Beta vulgaris HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 64.8
CiPaw.03G199900 Carya illinoinensis HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 66.7
Manes.06G153311 Manihot esculenta HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 66.7
Potri.017G148800 Populus trichocarpa HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 64.8
TAR636G2825 Trochodendron aralioides HOM05D002960 ORTHO05D003632 1.8e-15 86.3 54 66.7
Haze_05396 Corylus avellana HOM05D002960 ORTHO05D003632 2.3e-15 85.9 54 63.0
Aqoxy3G00494 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 3.0e-15 85.5 53 64.2
Oeu040525.2 Olea europaea HOM05D002960 ORTHO05D003632 3.0e-15 85.5 54 64.8
PSO266G0049 Papaver somniferum HOM05D002960 ORTHO05D003632 3.0e-15 85.5 54 63.0
PSO478G2229 Papaver somniferum HOM05D002960 ORTHO05D003632 3.0e-15 85.5 54 63.0
Phvul.009G223000 Phaseolus vulgaris HOM05D002960 ORTHO05D003632 3.0e-15 85.5 52 67.3
Rhsim03G0078900 Rhododendron simsii HOM05D002960 ORTHO05D003632 3.0e-15 85.5 56 66.1
Rhsim09G0201000 Rhododendron simsii HOM05D002960 ORTHO05D003632 3.0e-15 85.5 53 69.8
CiPaw.04G140400 Carya illinoinensis HOM05D002960 ORTHO05D003632 4.0e-15 85.1 54 64.8
AUR62021103 Chenopodium quinoa HOM05D002960 ORTHO05D003632 4.0e-15 85.1 54 63.0
AUR62031437 Chenopodium quinoa HOM05D002960 ORTHO05D003632 4.0e-15 85.1 54 63.0
Hma1.2p1_1713F.1_g298870 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 4.0e-15 85.1 54 66.7
Lj6g0018011 Lotus japonicus HOM05D002960 ORTHO05D003632 4.0e-15 85.1 54 64.8
Lalb_Chr08g0232801 Lupinus albus HOM05D002960 ORTHO05D003632 4.0e-15 85.1 52 69.2
Atru.chr8.1225 Acer truncatum HOM05D002960 ORTHO05D003632 5.2e-15 84.7 54 66.7
Aqoxy1G00557 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 5.2e-15 84.7 54 63.0
COL.COLO4_30293 Corchorus olitorius HOM05D002960 ORTHO05D003632 5.2e-15 84.7 52 67.3
Dinv21238 Davidia involucrata HOM05D002960 ORTHO05D003632 5.2e-15 84.7 54 64.8
Sabra04G0047600 Salix brachista HOM05D002960 ORTHO05D003632 5.2e-15 84.7 54 64.8
Sabra17G0124100 Salix brachista HOM05D002960 ORTHO05D003632 5.2e-15 84.7 54 64.8
Actinidia31843 Actinidia chinensis HOM05D002960 ORTHO05D003632 6.8e-15 84.3 53 67.9
Duzib106G0653 Durio zibethinus HOM05D002960 ORTHO05D003632 6.8e-15 84.3 53 67.9
Psat1g137760 Pisum sativum HOM05D002960 ORTHO05D003632 6.8e-15 84.3 54 66.7
TAR627G0210 Trochodendron aralioides HOM05D002960 ORTHO05D003632 6.8e-15 84.3 55 67.3
C06p28790 Brassica napus HOM05D002960 ORTHO05D003632 8.8e-15 84.0 58 65.5
Cc06_g05410 Coffea canephora HOM05D002960 ORTHO05D003632 8.8e-15 84.0 54 63.0
DCAR_008897 Daucus carota HOM05D002960 ORTHO05D003632 8.8e-15 84.0 52 69.2
Duzib084G0224 Durio zibethinus HOM05D002960 ORTHO05D003632 8.8e-15 84.0 54 66.7
Glyma.15G183400 Glycine max HOM05D002960 ORTHO05D003632 8.8e-15 84.0 52 63.5
Gohir.D12G255700 Gossypium hirsutum HOM05D002960 ORTHO05D003632 8.8e-15 84.0 54 64.8
Gorai.008G273800 Gossypium raimondii HOM05D002960 ORTHO05D003632 8.8e-15 84.0 54 64.8
Potri.004G072200 Populus trichocarpa HOM05D002960 ORTHO05D003632 8.8e-15 84.0 54 64.8
vmacro07383 Vaccinium macrocarpon HOM05D002960 ORTHO05D003632 8.8e-15 84.0 56 64.3
vmacro14679 Vaccinium macrocarpon HOM05D002960 ORTHO05D003632 8.8e-15 84.0 53 67.9
Cfa019929 Carpinus fangiana HOM05D002960 ORTHO05D003632 1.2e-14 83.6 54 61.1
Ciclev10030891m.g Citrus clementina HOM05D002960 ORTHO05D003632 1.2e-14 83.6 54 63.0
Sc13g0009270 Simmondsia chinensis HOM05D002960 ORTHO05D003632 1.2e-14 83.6 53 64.2
CAN.G824.20 Capsicum annuum HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 61.1
COL.COLO4_29794 Corchorus olitorius HOM05D002960 ORTHO05D003632 1.5e-14 83.2 53 64.2
Migut.J00974 Erythranthe guttata HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 66.7
Lalb_Chr01g0018271 Lupinus albus HOM05D002960 ORTHO05D003632 1.5e-14 83.2 53 64.2
Nitab4.5_0004686g0030 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 61.1
Nitab4.5_0008581g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 61.1
Nitab4.5_0009950g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 61.1
Os04g0307200 Oryza sativa ssp. japonica HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 66.7
Peaxi162Scf00820g00510 Petunia axillaris HOM05D002960 ORTHO05D003632 1.5e-14 83.2 54 61.1
MSTRG.5818 Avicennia marina HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 64.8
Cpa.g.sc107.126 Carica papaya HOM05D002960 ORTHO05D003632 2.0e-14 82.8 53 67.9
DCAR_020274 Daucus carota HOM05D002960 ORTHO05D003632 2.0e-14 82.8 52 65.4
Gohir.A04G065342 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.0e-14 82.8 53 64.2
Gohir.A12G253400 Gossypium hirsutum HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 63.0
Manes.14G021200 Manihot esculenta HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 64.8
SalBow3G4009 Salvia bowleyana HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 63.0
Solyc09g009180.3 Solanum lycopersicum HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 61.1
Sopen09g003910 Solanum pennellii HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 61.1
PGSC0003DMG400002680 Solanum tuberosum HOM05D002960 ORTHO05D003632 2.0e-14 82.8 54 61.1
Actinidia03141 Actinidia chinensis HOM05D002960 ORTHO05D003632 2.6e-14 82.4 53 66.0
Haze_26075 Corylus avellana HOM05D002960 ORTHO05D003632 2.6e-14 82.4 54 59.3
Duzib205G1208 Durio zibethinus HOM05D002960 ORTHO05D003632 2.6e-14 82.4 54 64.8
A07p26400 Brassica napus HOM05D002960 ORTHO05D003632 3.4e-14 82.0 46 76.1
BolC6t38049H Brassica oleracea HOM05D002960 ORTHO05D003632 3.4e-14 82.0 46 76.1
BraA07t30284Z Brassica rapa HOM05D002960 ORTHO05D003632 3.4e-14 82.0 46 76.1
Zm00001eb086520 Zea mays HOM05D002960 ORTHO05D003632 3.4e-14 82.0 54 66.7
Dinv09615 Davidia involucrata HOM05D002960 ORTHO05D003632 4.4e-14 81.6 52 65.4
Gohir.D04G102900 Gossypium hirsutum HOM05D002960 ORTHO05D003632 4.4e-14 81.6 53 64.2
Gorai.009G406200 Gossypium raimondii HOM05D002960 ORTHO05D003632 4.4e-14 81.6 53 64.2
ECA238G2360 Erigeron canadensis HOM05D002960 ORTHO05D003632 5.7e-14 81.3 51 64.7
Lj1A1006G38 Lonicera japonica HOM05D002960 ORTHO05D003632 5.7e-14 81.3 54 64.8
Prupe.2G302300 Prunus persica HOM05D002960 ORTHO05D003632 5.7e-14 81.3 52 65.4
Sed0001248 Sechium edule HOM05D002960 ORTHO05D003632 5.7e-14 81.3 52 67.3
MD07G1280100 Malus domestica HOM05D002960 ORTHO05D003632 7.5e-14 80.9 49 67.3
QL11p003257 Quercus lobata HOM05D002960 ORTHO05D003632 7.5e-14 80.9 54 63.0
THA.LOC104811944 Tarenaya hassleriana HOM05D002960 ORTHO05D003632 7.5e-14 80.9 53 67.9
MD01G1210000 Malus domestica HOM05D002960 ORTHO05D003632 9.8e-14 80.5 49 67.3
Sp5g35840 Schrenkiella parvula HOM05D002960 ORTHO05D003632 9.8e-14 80.5 46 73.9
Thecc.03G185900 Theobroma cacao HOM05D002960 ORTHO05D003632 1.3e-13 80.1 53 64.2
Nitab4.5_0011344g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.7e-13 79.7 54 57.4
Eucgr.A00001 Eucalyptus grandis HOM05D002960 ORTHO05D003632 2.2e-13 79.3 52 63.5
QL07p039962 Quercus lobata HOM05D002960 ORTHO05D003632 2.2e-13 79.3 53 60.4
unitig_744.g24693 Utricularia gibba HOM05D002960 ORTHO05D003632 2.2e-13 79.3 52 61.5
FvH4_7g30440 Fragaria vesca HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN01G2731 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN03G0384 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN03G1579 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN06G3309 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN06G4953 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN10G1974 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
FAN10G3414 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.8e-13 79.0 52 59.6
RcHm_v2.0_Chr1g0378591 Rosa chinensis HOM05D002960 ORTHO05D003632 3.7e-13 78.6 52 57.7
TWI14G0129 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 3.7e-13 78.6 52 61.5
Thhalv10018223m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 4.8e-13 78.2 46 69.6
Aa31LG4G250 Aethionema arabicum HOM05D002960 ORTHO05D003632 6.3e-13 77.8 53 64.2
CSS0035474 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 6.3e-13 77.8 53 64.2
Carub.0002s2756 Capsella rubella HOM05D002960 ORTHO05D003632 6.3e-13 77.8 51 62.7
CARHR074540 Cardamine hirsuta HOM05D002960 ORTHO05D003632 1.1e-12 77.0 46 67.4
CSS0002001 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 1.4e-12 76.6 53 62.3
Lalb_Chr23g0276131 Lupinus albus HOM05D002960 ORTHO05D003632 1.4e-12 76.6 52 63.5
BcaC08g47593 Brassica carinata HOM05D002960 ORTHO05D024096 1.8e-12 76.3 52 67.3
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.8e-12 76.3 52 67.3
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.8e-12 76.3 52 67.3
ECA232G0210 Erigeron canadensis HOM05D002960 ORTHO05D003632 1.8e-12 76.3 54 61.1
HanXRQChr07g0202321 Helianthus annuus HOM05D002960 ORTHO05D003632 1.8e-12 76.3 54 59.3
CBR_g22342 Chara braunii HOM05D002960 ORTHO05D003632 2.4e-12 75.9 52 63.5
Lsat_1_v5_gn_2_22661 Lactuca sativa HOM05D002960 ORTHO05D003632 2.4e-12 75.9 52 63.5
Oeu034359.1 Olea europaea HOM05D002960 ORTHO05D003632 2.4e-12 75.9 54 57.4
SHI09095 Sapria himalayana HOM05D002960 ORTHO05D003632 2.4e-12 75.9 50 58.0
AagrBONN_evm.TU.Sc2ySwM_117.2502 Anthoceros agrestis HOM05D002960 ORTHO05D003632 3.1e-12 75.5 52 65.4
AT1G79940 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 3.1e-12 75.5 46 65.2
HanXRQChr14g0433471 Helianthus annuus HOM05D002960 ORTHO05D003632 3.1e-12 75.5 49 63.3
Lsat_1_v5_gn_9_56821 Lactuca sativa HOM05D002960 ORTHO05D003632 3.1e-12 75.5 52 63.5
AL2G41600 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 5.4e-12 74.7 58 56.9
Dinv35266 Davidia involucrata HOM05D002960 ORTHO05D003632 5.4e-12 74.7 53 64.2
SEGI_20479 Sequoiadendron giganteum HOM05D002960 ORTHO05D003632 5.4e-12 74.7 46 67.4
Cfa019431 Carpinus fangiana HOM05D002960 ORTHO05D003632 7.0e-12 74.3 45 64.4
Oeu027867.1 Olea europaea HOM05D002960 ORTHO05D003632 7.0e-12 74.3 53 60.4
GSVIVG01028825001 Vitis vinifera HOM05D002960 ORTHO05D003632 9.1e-12 73.9 46 63.0
Nitab4.5_0001331g0010 Nicotiana tabacum HOM05D002960 ORTHO05D003632 1.2e-11 73.6 49 63.3
Nitab4.5_0000472g0060 Nicotiana tabacum HOM05D002960 ORTHO05D003632 2.0e-11 72.8 49 61.2
PGR042G1381 Punica granatum HOM05D002960 ORTHO05D003632 2.0e-11 72.8 50 60.0
TWI39G0419 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 2.0e-11 72.8 52 61.5
MSTRG.8700 Avicennia marina HOM05D002960 ORTHO05D003632 5.9e-11 71.2 53 56.6
HPP92_013501 Vanilla planifolia HOM05D002960 ORTHO05D003632 7.7e-11 70.9 51 58.8
CAN.G2487.1 Capsicum annuum HOM05D002960 ORTHO05D003632 1.0e-10 70.5 49 61.2
unitig_37.g11973 Utricularia gibba HOM05D002960 ORTHO05D003632 1.0e-10 70.5 49 63.3
Pp3c20_22800 Physcomitrium patens HOM05D002960 ORTHO05D003632 2.9e-10 68.9 54 53.7
SalBow4G0209 Salvia bowleyana HOM05D002960 ORTHO05D003632 2.9e-10 68.9 53 56.6
Cc02_g02260 Coffea canephora HOM05D002960 ORTHO05D003632 5.0e-10 68.2 54 53.7
Migut.F00279 Erythranthe guttata HOM05D002960 ORTHO05D003632 6.6e-10 67.8 50 60.0
Solyc03g007610.4 Solanum lycopersicum HOM05D002960 ORTHO05D003632 6.6e-10 67.8 44 61.4
Sopen03g003560 Solanum pennellii HOM05D002960 ORTHO05D003632 6.6e-10 67.8 44 61.4
Mapoly0090s0076 Marchantia polymorpha HOM05D002960 ORTHO05D003632 5.5e-09 64.7 53 49.1
PGSC0003DMG402009494 Solanum tuberosum HOM05D002960 ORTHO05D003632 7.2e-09 64.3 47 53.2
SGA_v2.0_scaffold60G21120 Striga asiatica HOM05D002960 ORTHO05D003632 1.0e-07 60.5 48 50.0
Thhalv10024622m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 2.3e-07 59.3 41 58.5
AL7G32940 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 3.0e-07 58.9 41 56.1
BcaC09g51249 Brassica carinata HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
A01p12530 Brassica napus HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
C01p15120 Brassica napus HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
BolC1t01461H Brassica oleracea HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
BraA01t01198Z Brassica rapa HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
Carub.0007s2025 Capsella rubella HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 58.5
Sp7g19260 Schrenkiella parvula HOM05D002960 ORTHO05D003632 4.0e-07 58.5 41 56.1
AT4G21180 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 5.2e-07 58.2 41 56.1
BcaNung03836 Brassica carinata HOM05D002960 ORTHO05D003632 8.9e-07 57.4 41 56.1
Thecc.05G083700 Theobroma cacao HOM05D002960 ORTHO05D003632 8.9e-07 57.4 35 60.0
CARHR227760 Cardamine hirsuta HOM05D002960 ORTHO05D003632 2.0e-06 56.2 41 56.1
SMO364G0140 Selaginella moellendorffii HOM05D002960 ORTHO05D003632 7.5e-06 54.3 38 55.3


User provided reference genes

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