Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 4.3e-262 907.5 475 100.0
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 6.7e-207 724.2 742 58.6
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 4.0e-167 592.0 742 49.3
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 8.2e-165 584.3 742 49.2
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 4.5e-163 578.6 737 48.6
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 8.5e-162 574.3 722 48.2
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 7.2e-161 571.2 750 47.2
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 1.2e-160 570.5 743 47.5
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 2.3e-159 566.2 724 47.9
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 2.6e-158 562.8 732 47.1
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 5.7e-158 561.6 732 46.6
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 1.3e-157 560.5 733 47.1
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 3.7e-157 558.9 724 47.8
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 1.4e-156 557.0 736 47.1
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 3.1e-156 555.8 749 46.6
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 4.1e-156 555.4 743 45.5
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 1.2e-155 553.9 736 47.3
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 1.6e-155 553.5 749 46.5
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 2.0e-155 553.1 727 46.4
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 2.7e-155 552.7 730 46.8
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 2.7e-155 552.7 751 46.9
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 5.9e-155 551.6 727 47.0
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 7.7e-155 551.2 723 46.7
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 7.7e-155 551.2 723 46.5
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 1.0e-154 550.8 735 46.0
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 1.3e-154 550.4 750 46.7
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 1.7e-154 550.1 723 46.3
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 6.5e-154 548.1 723 46.2
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 6.5e-154 548.1 723 46.2
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 6.5e-154 548.1 729 45.8
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 6.5e-154 548.1 749 45.9
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 8.5e-154 547.7 723 45.9
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 8.5e-154 547.7 729 45.8
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 8.5e-154 547.7 723 45.8
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 8.5e-154 547.7 723 46.5
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 1.1e-153 547.4 731 45.7
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 1.9e-153 546.6 726 46.3
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 2.5e-153 546.2 736 45.4
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 3.2e-153 545.8 734 45.2
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 4.2e-153 545.4 732 45.8
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 5.5e-153 545.0 726 46.1
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 9.5e-153 544.3 726 46.1
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 1.2e-152 543.9 744 45.3
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.6e-152 543.5 704 46.9
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 3.6e-152 542.3 737 45.6
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 1.0e-151 540.8 738 45.1
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 1.4e-151 540.4 733 45.2
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 1.4e-151 540.4 737 45.5
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 1.8e-151 540.0 742 45.3
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 2.3e-151 539.7 724 45.3
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 2.3e-151 539.7 731 45.4
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 6.8e-151 538.1 744 44.8
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 6.8e-151 538.1 733 45.2
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 6.8e-151 538.1 725 45.5
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 6.8e-151 538.1 742 45.3
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 6.8e-151 538.1 736 45.8
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 8.8e-151 537.7 725 46.1
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 1.2e-150 537.3 709 45.6
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 1.5e-150 537.0 725 45.2
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 2.0e-150 536.6 736 46.5
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 2.0e-150 536.6 724 46.4
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 2.0e-150 536.6 735 45.2
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 4.4e-150 535.4 733 45.0
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 5.7e-150 535.0 727 45.3
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 1.3e-149 533.9 749 44.7
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 1.3e-149 533.9 749 44.7
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 2.8e-149 532.7 736 44.8
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 2.8e-149 532.7 736 45.0
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 3.7e-149 532.3 736 44.8
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 4.9e-149 531.9 702 47.3
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 3.1e-148 529.3 729 45.1
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 7.0e-148 528.1 734 45.2
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 3.5e-147 525.8 739 44.8
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 3.5e-147 525.8 723 45.0
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 7.8e-147 524.6 739 44.4
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 1.7e-146 523.5 739 44.5
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 3.8e-146 522.3 738 44.3
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 3.8e-146 522.3 735 44.4
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 6.6e-146 521.5 744 44.1
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 6.6e-146 521.5 736 43.9
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 6.6e-146 521.5 742 44.9
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 1.1e-145 520.8 733 43.7
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.1e-145 520.8 733 43.7
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.9e-145 520.0 736 43.8
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 1.9e-145 520.0 694 46.1
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 2.5e-145 519.6 733 43.7
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 5.6e-145 518.5 733 43.5
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 7.3e-145 518.1 733 43.5
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 7.3e-145 518.1 733 43.5
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.2e-144 517.3 733 43.5
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 1.6e-144 516.9 709 45.4
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 2.8e-144 516.2 726 43.4
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 8.0e-144 514.6 698 45.4
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 1.8e-143 513.5 732 42.9
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 2.2e-141 506.5 732 42.3
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 2.2e-141 506.5 745 42.3
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 2.2e-141 506.5 744 43.3
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 8.3e-141 504.6 729 42.4
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 8.3e-141 504.6 753 42.6
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 2.0e-139 500.0 733 41.9
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.3e-135 486.5 749 42.2
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.2e-133 479.9 704 42.9
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 3.7e-133 479.2 714 43.1
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 1.9e-132 476.9 723 41.5
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 2.8e-128 463.0 718 41.2
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 8.1e-128 461.5 728 40.9
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 5.2e-127 458.8 670 43.3
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 3.7e-125 452.6 755 38.8
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 3.9e-122 442.6 725 39.6
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 1.4e-119 434.1 737 38.3
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 1.5e-118 430.6 722 38.9
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 1.1e-116 424.5 691 41.0
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 9.6e-113 411.4 663 38.8
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 6.9e-111 405.2 745 38.1
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 3.4e-110 402.9 675 41.5
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 4.4e-110 402.5 727 38.0
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 9.3e-108 394.8 661 38.1
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 5.6e-105 385.6 347 59.7
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 1.7e-101 374.0 612 40.0
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 8.7e-98 361.7 211 82.9
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 6.2e-96 355.5 210 81.9
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 4.0e-95 352.8 211 82.0
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 1.2e-94 351.3 867 31.3
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.5e-94 350.9 211 81.5
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.5e-89 334.3 237 74.3
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 2.8e-88 330.1 211 77.3
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 1.0e-85 321.6 193 79.8
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 1.6e-83 314.3 184 82.6
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 2.7e-83 313.5 722 32.8
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 5.1e-82 309.3 190 77.9
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 1.1e-76 291.6 229 69.0
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 1.0e-74 285.0 224 64.3
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 6.7e-74 282.3 227 61.7
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.3e-72 278.1 229 63.3
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 1.8e-63 247.7 232 55.6
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 2.0e-46 191.0 123 75.6
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.7e-46 190.7 175 61.1
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 4.5e-46 189.9 187 54.5
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 4.0e-42 176.8 203 50.2
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 8.8e-42 175.6 834 21.3
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 8.8e-42 175.6 264 44.3
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 5.7e-41 172.9 731 23.5
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 4.1e-39 166.8 137 62.0
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 7.0e-39 166.0 240 44.6
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 2.0e-38 164.5 133 63.2
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.7e-38 164.1 241 40.2
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 1.0e-34 152.1 220 41.4
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 1.2e-33 148.7 220 40.5
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 1.3e-29 135.2 105 62.9
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 1.3e-29 135.2 105 62.9
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 1.1e-28 132.1 259 36.3
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 8.0e-27 125.9 96 65.6
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 3.7e-16 90.5 85 54.1
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 7.0e-15 86.3 126 42.1
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.0e-13 82.4 60 60.0
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 1.0e-13 82.4 105 44.8
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 6.2e-11 73.2 84 40.5
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 6.2e-11 73.2 59 62.7
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 1.8e-10 71.6 50 62.0
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 4.0e-10 70.5 57 61.4
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 4.6e-06 57.0 227 21.6


User provided reference genes

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