Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 2.0e-175 619.0 318 100.0
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 5.4e-104 381.7 321 62.9
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 7.1e-104 381.3 270 69.6
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 7.8e-103 377.9 262 70.6
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 7.8e-103 377.9 269 69.1
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.3e-102 376.3 324 63.3
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 3.9e-102 375.6 296 63.5
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.5e-101 373.6 300 62.7
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 1.5e-101 373.6 261 70.5
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 4.3e-101 372.1 314 62.7
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 1.6e-100 370.2 310 63.9
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 2.8e-100 369.4 322 58.7
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.8e-100 368.6 311 59.8
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 6.2e-100 368.2 319 60.8
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 8.1e-100 367.9 305 59.0
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 1.4e-99 367.1 307 62.9
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 2.4e-99 366.3 265 66.8
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 2.4e-99 366.3 284 63.4
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 5.3e-99 365.2 320 60.0
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 6.9e-99 364.8 302 60.9
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 1.2e-98 364.0 257 69.6
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.2e-98 364.0 320 59.1
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.5e-98 363.6 316 60.4
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 2.6e-98 362.8 282 64.2
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 4.5e-98 362.1 262 68.3
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 1.3e-97 360.5 318 58.8
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.3e-97 360.5 322 58.7
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.7e-97 360.1 315 61.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 2.4e-96 356.3 323 57.6
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 2.4e-96 356.3 323 57.6
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 3.2e-96 355.9 307 59.9
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 3.2e-96 355.9 310 59.4
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 5.4e-96 355.1 306 60.5
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 5.4e-96 355.1 312 59.0
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 7.1e-96 354.8 324 57.7
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 7.1e-96 354.8 324 57.7
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 9.3e-96 354.4 325 56.9
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.2e-95 354.0 309 58.9
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.2e-95 354.0 305 58.4
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.6e-95 353.6 291 61.5
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 2.1e-95 353.2 293 61.8
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.7e-95 352.8 306 59.5
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 3.5e-95 352.4 281 62.6
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 6.0e-95 351.7 291 61.5
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 7.9e-95 351.3 257 66.5
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 1.0e-94 350.9 317 57.7
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.0e-94 350.9 321 57.0
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 2.3e-94 349.7 291 61.2
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.0e-94 349.4 291 61.2
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.0e-94 349.4 327 56.3
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.8e-92 342.8 251 66.5
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 5.3e-91 338.6 301 58.5
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 6.9e-91 338.2 301 60.1
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.2e-90 337.4 303 59.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.5e-90 337.0 275 62.2
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 1.5e-90 337.0 317 58.0
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.5e-90 337.0 258 65.1
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 2.0e-90 336.7 285 60.7
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 5.8e-90 335.1 293 57.7
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 5.8e-90 335.1 293 58.0
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 7.6e-90 334.7 316 56.0
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 7.6e-90 334.7 255 65.5
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 2.2e-89 333.2 308 57.5
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 3.8e-89 332.4 287 58.9
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 8.4e-89 331.3 299 58.5
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 8.4e-89 331.3 264 61.4
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.4e-88 330.5 308 57.8
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 2.4e-88 329.7 266 62.0
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 4.2e-88 328.9 263 62.0
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 9.3e-88 327.8 306 56.5
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 9.3e-88 327.8 295 57.6
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.2e-87 327.4 273 61.2
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 2.1e-87 326.6 272 61.4
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 2.7e-87 326.2 285 59.6
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.7e-87 326.2 305 56.4
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 6.0e-87 325.1 260 63.5
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 6.0e-87 325.1 227 67.8
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 7.9e-87 324.7 277 59.9
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 2.3e-86 323.2 260 62.3
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 6.7e-86 321.6 272 62.1
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 8.7e-86 321.2 304 56.9
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.1e-85 320.9 276 59.8
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 1.1e-85 320.9 276 59.8
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 2.5e-85 319.7 276 60.9
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 2.5e-85 319.7 276 60.9
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.3e-84 317.4 283 58.7
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 1.6e-84 317.0 321 54.2
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 1.5e-82 310.5 272 59.2
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.9e-81 305.4 217 68.2
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 8.4e-81 304.7 288 58.3
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 8.4e-81 304.7 197 73.6
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 4.6e-79 298.9 262 59.5
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.3e-78 296.6 215 67.4
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 3.3e-77 292.7 253 61.3
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 1.7e-73 280.4 176 75.6
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.9e-72 276.9 254 56.3
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 7.9e-71 271.6 224 61.6
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.3e-70 270.0 176 72.7
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.5e-66 257.3 279 49.5
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 4.5e-66 255.8 199 61.8
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 3.8e-65 252.7 213 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 2.3e-62 243.4 196 61.2
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 6.7e-62 241.9 180 67.2
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 6.7e-62 241.9 220 60.9
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 6.7e-62 241.9 230 53.0
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 6.5e-57 225.3 206 62.6
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 2.8e-52 209.9 206 51.9
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.3e-44 184.5 250 42.4
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.7e-44 183.0 166 54.2
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 1.5e-40 171.0 201 43.3
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 1.9e-40 170.6 203 45.3
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.6e-39 167.5 127 60.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 9.8e-29 131.7 118 54.2
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.4e-27 127.9 85 75.3
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 2.0e-26 124.0 90 68.9
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.5e-26 122.9 85 65.9
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 8.9e-22 108.6 60 83.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 2.6e-21 107.1 75 69.3
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 3.6e-07 60.1 139 31.7
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 1.1e-06 58.5 37 67.6


User provided reference genes

Program Settings