Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.1e-160 568.9 283 100.0
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.2e-101 372.9 257 77.0
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 9.5e-92 340.9 226 75.7
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.6e-91 340.1 256 70.3
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.8e-91 339.3 256 71.1
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 3.6e-91 339.0 256 69.5
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 4.7e-91 338.6 256 69.9
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-90 337.0 256 69.5
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.4e-90 337.0 257 68.9
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 8.9e-90 334.3 278 65.1
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 2.0e-89 333.2 256 68.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 2.6e-89 332.8 256 66.8
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.4e-89 332.4 256 66.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.4e-89 332.0 256 68.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.4e-89 332.0 256 66.8
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 5.7e-89 331.6 256 67.6
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.7e-89 331.6 256 66.4
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 5.7e-89 331.6 256 66.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 5.7e-89 331.6 244 71.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 7.5e-89 331.3 256 68.0
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 7.5e-89 331.3 256 67.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 9.8e-89 330.9 256 67.6
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 9.8e-89 330.9 256 67.6
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.3e-88 330.5 256 66.8
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.3e-88 330.5 256 66.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.3e-88 330.5 256 69.1
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.2e-88 329.7 257 67.3
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.2e-88 329.7 256 67.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 2.2e-88 329.7 256 68.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.2e-88 329.7 257 66.9
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.2e-88 329.7 256 67.2
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.8e-88 329.3 256 66.8
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.8e-88 329.3 256 67.2
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.8e-88 329.3 256 67.2
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 3.7e-88 328.9 256 66.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 3.7e-88 328.9 256 68.8
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.3e-88 328.2 256 67.6
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 8.3e-88 327.8 256 65.6
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 8.3e-88 327.8 256 68.4
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-87 327.4 269 63.6
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.1e-87 327.4 294 60.5
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.1e-87 327.4 256 66.0
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.4e-87 327.0 256 66.0
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.8e-87 326.6 256 66.4
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 1.8e-87 326.6 256 67.2
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.8e-87 326.6 257 67.3
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.8e-87 326.6 256 66.0
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 67.6
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 67.6
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 66.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 66.8
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 66.0
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.4e-87 326.2 256 66.8
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.1e-87 325.9 256 66.8
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.1e-87 325.5 256 66.4
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 4.1e-87 325.5 270 64.4
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.1e-87 325.5 256 66.0
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 5.4e-87 325.1 256 67.2
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 5.4e-87 325.1 256 66.8
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 5.4e-87 325.1 256 66.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 7.0e-87 324.7 256 66.4
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 7.0e-87 324.7 256 65.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 9.2e-87 324.3 256 66.8
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 9.2e-87 324.3 256 65.6
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 9.2e-87 324.3 256 66.8
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.2e-86 323.9 257 65.4
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.2e-86 323.9 256 66.4
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.6e-86 323.6 256 66.8
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.0e-86 323.2 256 64.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.0e-86 323.2 257 66.5
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.0e-86 323.2 256 65.2
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.7e-86 322.8 256 66.4
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.7e-86 322.8 256 66.4
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.7e-86 322.8 256 67.6
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 3.5e-86 322.4 256 68.0
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 4.5e-86 322.0 256 65.6
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 4.5e-86 322.0 256 65.2
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 5.9e-86 321.6 256 65.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 66.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 66.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 66.0
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 65.6
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 65.2
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 66.8
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 7.8e-86 321.2 256 64.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.0e-85 320.9 256 65.6
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.0e-85 320.9 256 65.6
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.0e-85 320.9 278 62.6
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.0e-85 320.9 256 66.0
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.3e-85 320.5 256 65.6
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.7e-85 320.1 256 64.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 2.3e-85 319.7 256 66.0
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.3e-85 319.7 256 66.0
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 2.3e-85 319.7 256 66.0
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 2.3e-85 319.7 256 65.2
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 2.9e-85 319.3 256 65.6
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 3.8e-85 318.9 256 65.6
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 5.0e-85 318.5 256 65.2
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 5.0e-85 318.5 256 64.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.1e-84 317.4 256 65.6
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.1e-84 317.4 256 65.6
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.1e-84 317.4 256 64.8
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.5e-84 317.0 256 65.6
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.5e-84 317.0 255 65.9
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 5.6e-84 315.1 256 64.1
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 5.6e-84 315.1 256 66.0
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.6e-83 313.5 256 65.2
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.1e-83 313.2 257 63.0
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 2.8e-83 312.8 230 69.1
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.6e-83 312.4 256 65.2
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.3e-82 309.7 256 63.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 3.2e-79 299.3 256 60.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.3e-77 293.9 257 58.8
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.4e-73 279.3 256 55.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.4e-71 273.9 252 56.7
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 3.5e-70 269.2 237 62.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 6.6e-69 265.0 256 53.1
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.2e-64 250.0 224 60.7
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.4e-63 247.3 127 92.9
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.9e-63 246.9 127 92.1
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.4e-63 245.4 127 91.3
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 7.8e-62 241.5 257 51.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.3e-60 235.7 166 75.3
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.3e-60 235.7 207 60.9
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-57 226.1 127 81.9
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.5e-46 189.5 241 42.3
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 3.0e-45 186.4 236 45.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 5.6e-44 182.2 105 80.0
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 2.9e-40 169.9 224 46.9
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.1e-38 163.7 259 39.8
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 7.1e-31 138.7 237 36.3
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 4.6e-30 136.0 215 42.3
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.0e-29 134.8 326 33.4
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 8.7e-29 131.7 146 50.0
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 8.7e-21 105.1 86 60.5
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 3.7e-19 99.8 69 66.7
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.2e-19 98.6 69 65.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.4e-18 97.8 86 57.0
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.6e-14 84.3 70 61.4
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.4e-10 71.2 74 48.6
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.4e-10 71.2 74 48.6
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.8e-10 70.9 35 94.3
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.9e-10 68.9 44 75.0
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 6.5e-08 62.4 33 78.8


User provided reference genes

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