Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.2e-88 329.7 161 100.0
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.4e-55 219.9 112 92.9
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.4e-44 183.3 168 54.8
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 1.4e-44 183.3 120 70.0
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.9e-44 183.0 113 74.3
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 2.4e-44 182.6 130 65.4
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 2.4e-44 182.6 120 70.8
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 1.2e-43 180.3 113 75.2
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 1.2e-43 180.3 113 72.6
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.2e-43 180.3 120 70.8
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.2e-43 180.3 120 70.8
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 1.6e-43 179.9 126 65.9
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.6e-43 179.9 120 70.0
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 2.1e-43 179.5 113 73.5
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 2.1e-43 179.5 120 69.2
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 2.1e-43 179.5 113 76.1
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 2.1e-43 179.5 113 73.5
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 2.7e-43 179.1 124 66.9
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 2.7e-43 179.1 113 73.5
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 2.7e-43 179.1 117 70.1
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 3.5e-43 178.7 113 74.3
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 3.5e-43 178.7 113 74.3
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 4.6e-43 178.3 113 74.3
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 4.6e-43 178.3 113 73.5
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 4.6e-43 178.3 113 73.5
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 4.6e-43 178.3 113 74.3
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 4.6e-43 178.3 113 72.6
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 4.6e-43 178.3 120 68.3
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 4.6e-43 178.3 117 70.9
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 6.0e-43 177.9 113 74.3
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 6.0e-43 177.9 126 66.7
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 6.0e-43 177.9 120 68.3
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 7.9e-43 177.6 113 73.5
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 7.9e-43 177.6 120 67.5
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 7.9e-43 177.6 120 69.2
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 7.9e-43 177.6 113 73.5
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.0e-42 177.2 120 67.5
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.0e-42 177.2 120 70.8
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.3e-42 176.8 120 67.5
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 1.3e-42 176.8 120 69.2
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 1.3e-42 176.8 120 67.5
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 1.8e-42 176.4 113 72.6
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 1.8e-42 176.4 113 73.5
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.8e-42 176.4 113 73.5
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 1.8e-42 176.4 113 70.8
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 2.3e-42 176.0 120 68.3
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 3.0e-42 175.6 159 56.0
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 3.0e-42 175.6 113 71.7
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 3.0e-42 175.6 113 69.9
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 3.0e-42 175.6 120 70.0
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 3.0e-42 175.6 126 65.1
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 3.9e-42 175.3 120 68.3
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 3.9e-42 175.3 113 69.9
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 3.9e-42 175.3 113 72.6
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 3.9e-42 175.3 120 66.7
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 5.1e-42 174.9 120 69.2
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 5.1e-42 174.9 120 69.2
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 5.1e-42 174.9 120 66.7
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 6.7e-42 174.5 119 66.4
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 6.7e-42 174.5 113 68.1
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 6.7e-42 174.5 113 68.1
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 6.7e-42 174.5 120 66.7
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 6.7e-42 174.5 120 69.2
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 8.7e-42 174.1 120 69.2
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 8.7e-42 174.1 111 73.0
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.1e-41 173.7 113 71.7
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 1.1e-41 173.7 120 67.5
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.1e-41 173.7 120 66.7
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.1e-41 173.7 117 67.5
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 1.5e-41 173.3 113 71.7
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 1.9e-41 172.9 120 65.0
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 1.9e-41 172.9 128 64.1
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 3.3e-41 172.2 118 66.9
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 3.3e-41 172.2 113 69.9
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 3.3e-41 172.2 117 69.2
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 3.3e-41 172.2 113 71.7
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.3e-41 172.2 113 69.9
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.3e-41 172.2 113 69.9
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 4.3e-41 171.8 117 70.1
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 4.3e-41 171.8 113 71.7
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 4.3e-41 171.8 111 69.4
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.6e-40 169.9 120 65.0
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 2.1e-40 169.5 113 69.9
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 2.8e-40 169.1 128 62.5
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 3.7e-40 168.7 139 59.7
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 3.7e-40 168.7 132 60.6
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 6.2e-40 167.9 113 70.8
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 8.2e-40 167.5 109 70.6
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 1.4e-39 166.8 117 67.5
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.8e-39 166.4 141 58.9
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 3.1e-39 165.6 117 66.7
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 4.0e-39 165.2 118 67.8
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 5.3e-39 164.9 116 64.7
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 6.9e-39 164.5 111 68.5
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 6.9e-39 164.5 113 67.3
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 9.0e-39 164.1 114 66.7
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.5e-38 163.3 117 65.8
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 2.9e-37 159.1 148 54.7
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 4.9e-37 158.3 112 64.3
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 6.5e-37 157.9 108 65.7
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.1e-36 157.1 98 73.5
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 4.2e-36 155.2 112 64.3
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.2e-35 153.7 112 66.1
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.8e-34 149.8 145 53.1
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 8.7e-34 147.5 113 64.6
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 1.5e-33 146.7 111 64.0
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 7.4e-33 144.4 169 47.9
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 6.3e-32 141.4 111 57.7
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.1e-31 140.6 113 61.1
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.4e-31 140.2 91 70.3
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 2.6e-30 136.0 113 57.5
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 1.7e-29 133.3 109 56.0
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 1.4e-28 130.2 85 71.8
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 9.3e-28 127.5 90 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 3.0e-26 122.5 105 56.2
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 6.7e-26 121.3 113 51.3
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 8.8e-26 120.9 73 79.5
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.9e-25 119.8 69 79.7
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 1.9e-25 119.8 69 81.2
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 7.4e-25 117.9 72 77.8
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 9.7e-25 117.5 113 47.8
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 6.3e-24 114.8 73 71.2
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 9.1e-23 110.9 69 76.8
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 3.4e-22 109.0 74 70.3
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 4.5e-22 108.6 111 46.8
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 3.9e-18 95.5 91 48.4
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 6.7e-18 94.7 65 70.8
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 4.8e-16 88.6 108 47.2
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 5.3e-15 85.1 111 38.7
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 7.0e-07 58.2 45 55.6
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 9.1e-07 57.8 45 60.0
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 9.1e-07 57.8 45 55.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.2e-06 57.4 50 54.0
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.6e-06 57.0 39 61.5
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.6e-06 57.0 39 61.5
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.6e-06 56.2 39 59.0
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 2.6e-06 56.2 48 54.2
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 4.5e-06 55.5 39 59.0
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 4.5e-06 55.5 40 60.0
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 5.9e-06 55.1 38 68.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 5.9e-06 55.1 39 59.0
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 7.7e-06 54.7 45 51.1
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 7.7e-06 54.7 39 59.0
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 7.7e-06 54.7 49 49.0
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 7.7e-06 54.7 39 56.4


User provided reference genes

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