Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 3.4e-77 292.0 192 100.0
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.5e-56 222.6 194 73.2
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.8e-44 182.2 132 72.0
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 6.5e-44 181.4 142 67.6
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 1.9e-43 179.9 153 63.4
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 3.2e-43 179.1 140 69.3
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 7.2e-43 177.9 157 62.4
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.2e-43 177.9 135 68.9
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 1.2e-42 177.2 140 66.4
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.6e-42 176.8 139 66.9
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 2.1e-42 176.4 136 68.4
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 6.1e-42 174.9 136 66.9
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 6.1e-42 174.9 138 65.9
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 8.0e-42 174.5 135 67.4
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.0e-41 174.1 137 67.9
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.4e-41 173.7 138 65.9
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.4e-41 173.7 138 65.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 1.4e-41 173.7 136 66.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.4e-41 173.7 144 65.3
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.3e-41 172.9 154 63.0
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 3.0e-41 172.6 133 67.7
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 3.0e-41 172.6 137 67.2
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 6.7e-41 171.4 143 64.3
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 8.8e-41 171.0 143 66.4
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.1e-40 170.6 137 66.4
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.6e-40 169.5 141 66.0
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 2.6e-40 169.5 131 67.9
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 3.3e-40 169.1 139 64.0
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 4.4e-40 168.7 137 65.7
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 5.7e-40 168.3 139 63.3
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 9.7e-40 167.5 142 62.7
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 9.7e-40 167.5 142 62.0
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 1.3e-39 167.2 141 65.2
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.3e-39 167.2 135 64.4
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.3e-39 167.2 142 63.4
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.7e-39 166.8 136 63.2
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 2.2e-39 166.4 133 67.7
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 2.8e-39 166.0 137 62.0
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.8e-39 166.0 130 63.8
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 3.7e-39 165.6 133 64.7
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 4.8e-39 165.2 137 62.0
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 4.8e-39 165.2 141 61.7
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 4.8e-39 165.2 137 61.3
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 8.2e-39 164.5 130 66.2
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 8.2e-39 164.5 142 60.6
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.1e-38 164.1 135 62.2
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.1e-38 164.1 144 62.5
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 1.4e-38 163.7 135 63.0
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.8e-38 163.3 138 63.8
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 1.8e-38 163.3 138 63.0
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 3.1e-38 162.5 140 62.1
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 4.1e-38 162.2 136 61.0
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 4.1e-38 162.2 135 62.2
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 9.1e-38 161.0 143 60.1
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 9.1e-38 161.0 130 66.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.2e-37 160.6 135 60.7
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.6e-37 160.2 135 58.5
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 2.6e-37 159.5 138 61.6
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 2.6e-37 159.5 135 63.0
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 3.5e-37 159.1 132 64.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 5.9e-37 158.3 135 62.2
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 7.7e-37 157.9 138 60.1
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.0e-36 157.5 136 61.8
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.3e-36 157.1 139 61.9
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.3e-36 157.1 136 59.6
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.7e-36 156.8 136 58.8
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.7e-36 156.8 140 58.6
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.9e-36 156.0 140 57.1
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.8e-36 155.6 130 61.5
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 5.0e-36 155.2 138 58.7
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 6.5e-36 154.8 135 57.0
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 6.5e-36 154.8 126 64.3
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 8.5e-36 154.5 130 61.5
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.5e-35 153.7 135 58.5
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.5e-35 152.9 131 61.1
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 1.2e-34 150.6 138 55.1
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.2e-34 150.6 133 61.7
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.6e-34 150.2 138 57.2
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 2.7e-34 149.4 142 60.6
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 3.6e-34 149.1 138 56.5
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.6e-34 149.1 138 56.5
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 3.6e-34 149.1 138 56.5
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 3.6e-34 149.1 138 56.5
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 3.6e-34 149.1 138 56.5
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.1e-34 148.3 130 60.8
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 1.0e-33 147.5 141 58.9
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.0e-33 147.5 141 58.9
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.4e-33 147.1 141 58.9
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 3.0e-33 146.0 138 60.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 5.2e-33 145.2 141 58.2
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.7e-33 144.8 141 58.2
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 6.7e-33 144.8 138 55.1
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-32 144.1 138 54.3
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.2e-32 144.1 138 54.3
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.2e-32 144.1 138 57.2
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-32 143.7 138 54.3
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-32 143.7 138 54.3
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 1.5e-32 143.7 138 54.3
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.0e-32 143.3 130 57.7
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 3.3e-32 142.5 138 53.6
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 4.4e-32 142.1 130 58.5
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 5.7e-32 141.7 137 54.0
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 8.2e-31 137.9 135 54.8
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 8.2e-31 137.9 135 54.8
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 1.1e-30 137.5 130 57.7
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 1.8e-30 136.7 135 55.6
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.8e-30 136.7 142 54.2
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 4.1e-30 135.6 142 53.5
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 4.1e-30 135.6 142 53.5
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 5.3e-30 135.2 142 53.5
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 5.3e-30 135.2 138 55.1
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 7.0e-30 134.8 141 56.7
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 7.0e-30 134.8 130 56.2
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 9.1e-30 134.4 134 55.2
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 9.1e-30 134.4 142 53.5
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-29 133.3 137 51.8
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.0e-29 133.3 137 51.8
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.0e-29 133.3 137 51.8
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 3.5e-29 132.5 137 51.8
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 3.5e-29 132.5 137 51.8
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 1.5e-27 127.1 129 56.6
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.9e-27 126.7 150 49.3
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.7e-26 122.9 105 61.9
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 4.7e-26 122.1 142 47.9
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.0e-25 120.9 100 60.0
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.8e-25 120.2 130 51.5
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-24 117.5 130 51.5
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 4.4e-24 115.5 138 52.9
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.3e-23 114.0 139 51.1
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.3e-23 114.0 114 57.0
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 1.1e-22 110.9 144 50.7
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.1e-22 110.9 144 50.7
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 1.1e-22 110.9 135 49.6
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 7.7e-21 104.8 130 48.5
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 4.9e-15 85.5 102 47.1
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 6.3e-15 85.1 73 53.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.0e-13 80.1 67 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2481 Anthoceros agrestis HOM05D005256 ORTHO05D006491 5.8e-08 62.0 102 32.4
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 9.8e-08 61.2 60 56.7


User provided reference genes

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