Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 8.3e-137 490.3 243 100.0
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.5e-111 405.2 239 80.3
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.3e-110 403.3 240 80.8
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.7e-110 402.9 240 80.8
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.7e-110 402.9 245 78.0
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 3.0e-110 402.1 239 80.8
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.9e-109 399.4 237 80.2
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 5.6e-109 397.9 243 79.0
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.6e-109 397.9 242 79.8
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 7.3e-109 397.5 240 80.4
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 7.3e-109 397.5 239 79.9
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 3.6e-108 395.2 238 79.4
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 8.1e-108 394.0 238 79.4
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.1e-107 393.7 239 78.7
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.1e-107 393.7 239 78.7
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.8e-107 392.9 238 78.6
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.8e-107 392.9 238 78.6
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.8e-107 392.9 239 78.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.1e-107 392.1 237 78.9
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 3.1e-107 392.1 239 78.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 3.1e-107 392.1 240 77.9
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 3.1e-107 392.1 239 78.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 4.0e-107 391.7 237 78.5
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.0e-107 391.7 239 77.8
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 5.2e-107 391.3 239 77.4
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 5.2e-107 391.3 239 77.8
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 5.2e-107 391.3 239 78.2
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 5.2e-107 391.3 239 78.2
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 6.8e-107 391.0 240 78.3
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.8e-107 391.0 243 77.8
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 8.9e-107 390.6 242 77.7
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 1.2e-106 390.2 238 77.7
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.2e-106 390.2 243 78.2
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 1.2e-106 390.2 243 78.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.5e-106 389.8 242 77.7
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.5e-106 389.8 242 77.7
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.5e-106 389.8 239 77.8
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 2.0e-106 389.4 238 77.7
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 2.6e-106 389.0 239 77.0
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 3.4e-106 388.7 238 76.9
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 4.4e-106 388.3 239 77.8
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 4.4e-106 388.3 234 78.6
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.8e-106 387.9 242 76.9
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 7.6e-106 387.5 239 76.2
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 7.6e-106 387.5 245 77.6
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 9.9e-106 387.1 238 77.7
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.3e-105 386.7 239 77.4
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.3e-105 386.7 239 77.4
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.3e-105 386.7 239 77.4
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.3e-105 386.7 238 75.6
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 3.8e-105 385.2 239 78.2
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 4.9e-105 384.8 239 75.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 4.9e-105 384.8 236 77.5
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 4.9e-105 384.8 239 77.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.4e-105 384.4 239 76.6
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 8.4e-105 384.0 239 76.6
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 8.4e-105 384.0 237 77.6
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 8.4e-105 384.0 241 77.6
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 8.4e-105 384.0 238 77.7
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-104 383.6 238 77.3
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.1e-104 383.6 240 74.6
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.1e-104 383.6 243 76.5
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.4e-104 383.3 242 77.3
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.4e-104 383.3 241 76.3
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.9e-104 382.9 239 75.3
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.9e-104 382.9 238 76.5
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.9e-104 382.9 236 77.5
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.9e-104 382.9 237 77.2
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 3.2e-104 382.1 233 77.3
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 3.2e-104 382.1 239 76.2
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 4.2e-104 381.7 242 77.3
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 4.2e-104 381.7 239 75.7
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 7.1e-104 380.9 239 77.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 7.1e-104 380.9 245 74.7
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 1.2e-103 380.2 239 74.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.2e-103 380.2 243 75.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.2e-103 380.2 243 75.3
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.6e-103 379.8 237 77.6
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.6e-103 379.8 239 75.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.1e-103 379.4 237 75.9
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-103 379.4 240 74.6
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 6.0e-103 377.9 239 76.2
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 6.0e-103 377.9 240 74.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.3e-102 376.7 237 75.5
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.7e-102 376.3 242 77.3
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.0e-102 375.6 239 74.1
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 6.6e-102 374.4 242 76.9
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 6.6e-102 374.4 242 74.4
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 6.6e-102 374.4 242 77.3
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 6.6e-102 374.4 242 74.8
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.1e-101 373.6 242 74.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.9e-101 372.9 238 73.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 7.3e-101 370.9 243 76.1
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.2e-100 370.2 242 75.6
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.8e-100 369.0 241 75.9
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 6.2e-100 367.9 235 74.5
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.4e-99 366.7 224 77.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.0e-99 365.2 242 74.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.8e-98 361.3 225 76.9
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.3e-97 360.1 240 72.9
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-97 359.8 239 71.1
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 6.4e-97 357.8 234 72.2
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 3.2e-96 355.5 224 74.6
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.3e-94 349.4 239 70.7
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.3e-94 349.4 238 70.2
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.8e-92 342.4 256 67.6
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.0e-91 338.6 244 69.3
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.6e-90 335.9 244 68.4
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 5.8e-90 334.7 225 70.7
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 2.2e-89 332.8 366 50.8
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.2e-89 332.8 241 64.7
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 2.9e-89 332.4 237 67.9
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.4e-88 330.1 237 67.5
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.8e-86 323.2 236 64.0
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.9e-85 319.7 239 64.9
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 9.3e-80 300.8 238 61.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 6.7e-78 294.7 190 75.8
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 8.2e-76 287.7 172 81.4
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 6.9e-75 284.6 175 78.3
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 5.5e-72 275.0 249 57.4
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 3.0e-70 269.2 238 58.0
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 9.7e-69 264.2 225 60.9
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.4e-67 260.4 166 73.5
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.0e-62 242.7 129 95.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 6.7e-62 241.5 238 53.4
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.5e-61 240.4 226 53.5
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 8.2e-60 234.6 255 50.6
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 5.5e-56 221.9 126 83.3
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.7e-55 218.8 171 60.8
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 7.9e-55 218.0 106 96.2
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 4.4e-53 212.2 143 71.3
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.6e-50 203.0 239 48.1
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 6.1e-47 191.8 124 77.4
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.0e-46 189.5 220 44.5
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.1e-45 187.6 223 41.3
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 9.1e-43 177.9 220 41.8
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-33 147.1 86 81.4
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 5.0e-33 145.6 87 75.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 9.4e-32 141.4 104 64.4
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-27 127.1 103 60.2
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-26 123.6 72 73.6
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.4e-22 110.9 250 29.6
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.0e-22 109.4 77 66.2
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 9.8e-21 104.8 65 75.4
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.8e-19 100.5 64 68.8
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.8e-14 84.0 86 51.2
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.2e-11 73.2 70 57.1
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.0e-11 72.0 42 76.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 3.0e-09 66.6 184 31.0
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 5.0e-09 65.9 231 28.1
Migut.N00145 Erythranthe guttata HOM05D001214 ORTHO05D001029 2.5e-08 63.5 201 28.9
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 3.3e-08 63.2 217 28.6
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 9.5e-08 61.6 227 30.8
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.6e-07 60.8 185 28.1
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.1e-06 58.2 203 30.5
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 1.8e-06 57.4 212 29.2
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 1.8e-06 57.4 166 33.7
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 2.3e-06 57.0 213 29.1
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 2.3e-06 57.0 201 30.3
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 3.1e-06 56.6 219 27.9
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 3.1e-06 56.6 189 27.0
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 4.0e-06 56.2 195 27.7
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 4.0e-06 56.2 187 28.9
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 4.0e-06 56.2 187 28.9
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 4.0e-06 56.2 202 29.2
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 6.8e-06 55.5 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.58 Anthoceros agrestis HOM05D004677 ORTHO05D074401 8.9e-06 55.1 69 39.1
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 8.9e-06 55.1 198 30.8


User provided reference genes

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