Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1413 Ceratophyllum demersum HOM05D002039 ORTHO05D026939 5.3e-105 384.4 201 100.0
Nn1g04176 Nelumbo nucifera HOM05D002039 ORTHO05D005369 1.9e-38 163.3 303 35.6
ClCG03G008070 Citrullus lanatus HOM05D002039 ORTHO05D005369 1.2e-37 160.6 347 33.1
Hund23784 Selenicereus undatus HOM05D002039 ORTHO05D005369 6.2e-37 158.3 202 44.6
arahy.Tifrunner.gnm1.ann1.TT4JII Arachis hypogaea HOM05D002039 ORTHO05D005369 2.3e-36 156.4 234 41.5
MBI02_g32628_MAGBIO Magnolia biondii HOM05D002039 ORTHO05D005369 6.8e-36 154.8 314 34.1
TAR626G0341 Trochodendron aralioides HOM05D002039 ORTHO05D005369 8.9e-36 154.5 315 34.0
TAR624G0166 Trochodendron aralioides HOM05D002039 ORTHO05D005369 2.6e-35 152.9 309 33.0
Oeu029368.1 Olea europaea HOM05D002039 ORTHO05D005369 3.4e-35 152.5 293 34.5
TAR624G0590 Trochodendron aralioides HOM05D002039 ORTHO05D005369 5.8e-35 151.8 309 33.0
VMungo0251G3185 Vigna mungo HOM05D002039 ORTHO05D005369 9.9e-35 151.0 306 35.3
Ca_00353_v3 Cicer arietinum L. HOM05D002039 ORTHO05D005369 2.2e-34 149.8 309 33.7
Glyma.13G236700 Glycine max HOM05D002039 ORTHO05D005369 3.7e-34 149.1 315 32.7
Phvul.006G183300 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 8.3e-34 147.9 318 33.0
Lj6g0006997 Lotus japonicus HOM05D002039 ORTHO05D005369 1.4e-33 147.1 308 34.1
SalBow8G0156 Salvia bowleyana HOM05D002039 ORTHO05D005369 1.9e-33 146.7 283 33.2
VMungo0540G2072 Vigna mungo HOM05D002039 ORTHO05D005369 3.2e-33 146.0 311 32.5
Glyma.15G076900 Glycine max HOM05D002039 ORTHO05D005369 4.1e-33 145.6 315 32.4
CiPaw.09G062500 Carya illinoinensis HOM05D002039 ORTHO05D005369 7.1e-33 144.8 315 33.7
Phvul.002G230800 Phaseolus vulgaris HOM05D002039 ORTHO05D005369 7.1e-33 144.8 306 34.0
ATR0763G230 Amborella trichopoda HOM05D002039 ORTHO05D005369 1.6e-32 143.7 314 32.5
Haze_06398 Corylus avellana HOM05D002039 ORTHO05D005369 2.1e-32 143.3 316 32.3
Glyma.07G199500 Glycine max HOM05D002039 ORTHO05D005369 3.5e-32 142.5 306 34.3
Migut.M01118 Erythranthe guttata HOM05D002039 ORTHO05D005369 7.8e-32 141.4 315 31.4
Manes.17G048100 Manihot esculenta HOM05D002039 ORTHO05D005369 1.0e-31 141.0 283 33.6
Dinv17339 Davidia involucrata HOM05D002039 ORTHO05D005369 1.3e-31 140.6 316 31.0
Nn1g06448 Nelumbo nucifera HOM05D002039 ORTHO05D005369 1.3e-31 140.6 313 33.2
TPR.G16528 Trifolium pratense HOM05D002039 ORTHO05D005369 1.3e-31 140.6 309 32.7
Cfa000513 Carpinus fangiana HOM05D002039 ORTHO05D005369 1.7e-31 140.2 316 31.6
Psat1g203480 Pisum sativum HOM05D002039 ORTHO05D005369 2.3e-31 139.8 319 32.6
Aqoxy1G02330 Aquilegia oxysepala HOM05D002039 ORTHO05D005369 3.9e-31 139.0 315 29.2
CSS0048533 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 3.9e-31 139.0 316 31.6
Eucgr.D00605 Eucalyptus grandis HOM05D002039 ORTHO05D005369 3.9e-31 139.0 316 31.3
Glyma.13G176900 Glycine max HOM05D002039 ORTHO05D005369 3.9e-31 139.0 306 33.3
Lj4g0026541 Lotus japonicus HOM05D002039 ORTHO05D005369 3.9e-31 139.0 307 33.6
Medtr2g014290 Medicago truncatula HOM05D002039 ORTHO05D005369 3.9e-31 139.0 307 31.9
PSO675G8387 Papaver somniferum HOM05D002039 ORTHO05D005369 5.1e-31 138.7 319 31.3
QL05p042020 Quercus lobata HOM05D002039 ORTHO05D005369 5.1e-31 138.7 307 32.6
arahy.Tifrunner.gnm1.ann1.Z7YHJK Arachis hypogaea HOM05D002039 ORTHO05D005369 8.6e-31 137.9 285 33.7
Ah.14g089640 Amaranthus hybridus HOM05D005633 ORTHO05D007003 1.1e-30 137.5 225 40.0
CANSAT35G1633 Cannabis sativa HOM05D002039 ORTHO05D005369 1.1e-30 137.5 310 31.3
PSO541G3961 Papaver somniferum HOM05D002039 ORTHO05D005369 1.5e-30 137.1 319 31.0
Potri.011G056800 Populus trichocarpa HOM05D002039 ORTHO05D005369 1.9e-30 136.7 319 31.3
PGR004G1346 Punica granatum HOM05D002039 ORTHO05D005369 1.9e-30 136.7 308 31.8
Hma1.2p1_0208F.1_g088390 Hydrangea macrophylla HOM05D002039 ORTHO05D005369 3.3e-30 136.0 311 30.9
SGA_v2.0_scaffold22G09679 Striga asiatica HOM05D002039 ORTHO05D005369 4.3e-30 135.6 315 31.1
Gohir.D09G072900 Gossypium hirsutum HOM05D002039 ORTHO05D005369 5.6e-30 135.2 309 31.4
CsaV3_1G012480 Cucumis sativus L. HOM05D002039 ORTHO05D005369 7.3e-30 134.8 306 33.7
Lalb_Chr20g0121641 Lupinus albus HOM05D002039 ORTHO05D005369 9.5e-30 134.4 314 30.6
Gohir.A10G027300 Gossypium hirsutum HOM05D002039 ORTHO05D005369 1.2e-29 134.0 306 31.4
Aa31sc86G80 Aethionema arabicum HOM05D002039 ORTHO05D005369 1.6e-29 133.7 322 30.4
Manes.16G030250 Manihot esculenta HOM05D002039 ORTHO05D005369 1.6e-29 133.7 320 32.2
MSTRG.15860 Avicennia marina HOM05D002039 ORTHO05D005369 2.1e-29 133.3 315 29.8
CiPaw.10G051500 Carya illinoinensis HOM05D002039 ORTHO05D005369 2.8e-29 132.9 311 31.5
Duzib235G0008 Durio zibethinus HOM05D002039 ORTHO05D005369 2.8e-29 132.9 319 30.1
SGA_v2.0_scaffold100G29704 Striga asiatica HOM05D002039 ORTHO05D005369 2.8e-29 132.9 319 30.4
Gohir.D10G027700 Gossypium hirsutum HOM05D002039 ORTHO05D005369 4.7e-29 132.1 306 31.0
Gorai.011G029600 Gossypium raimondii HOM05D002039 ORTHO05D005369 4.7e-29 132.1 306 31.0
Nitab4.5_0000516g0120 Nicotiana tabacum HOM05D002039 ORTHO05D005369 4.7e-29 132.1 294 32.0
GSVIVG01021096001 Vitis vinifera HOM05D002039 ORTHO05D005369 4.7e-29 132.1 317 30.9
Zm00001eb322150 Zea mays HOM05D002039 ORTHO05D005369 6.2e-29 131.7 282 32.3
Atru.chr10.1813 Acer truncatum HOM05D002039 ORTHO05D005369 8.1e-29 131.3 306 30.4
TWI38G1755 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 8.1e-29 131.3 307 30.9
Prupe.4G051100 Prunus persica HOM05D002039 ORTHO05D005369 1.1e-28 131.0 313 30.0
Ciclev10014609m.g Citrus clementina HOM05D002039 ORTHO05D005369 2.4e-28 129.8 307 29.3
Nitab4.5_0002219g0040 Nicotiana tabacum HOM05D002039 ORTHO05D005369 4.0e-28 129.0 319 29.5
Thecc.06G183000 Theobroma cacao HOM05D002039 ORTHO05D005369 4.0e-28 129.0 306 29.7
Actinidia16564 Actinidia chinensis HOM05D002039 ORTHO05D005369 5.2e-28 128.6 315 30.5
Thhalv10007074m.g Eutrema salsugineum HOM05D002039 ORTHO05D005369 1.2e-27 127.5 321 29.3
Solyc02g077850.3 Solanum lycopersicum HOM05D002039 ORTHO05D005369 1.2e-27 127.5 319 30.1
CAN.G189.50 Capsicum annuum HOM05D002039 ORTHO05D005369 1.5e-27 127.1 309 31.7
Duzib160G0651 Durio zibethinus HOM05D002039 ORTHO05D005369 1.5e-27 127.1 306 29.4
Carub.0001s2680 Capsella rubella HOM05D002039 ORTHO05D005369 2.0e-27 126.7 321 29.6
MELO3C002622.2 Cucumis melo HOM05D002039 ORTHO05D005369 2.6e-27 126.3 306 32.4
DCAR_003390 Daucus carota HOM05D002039 ORTHO05D005369 2.6e-27 126.3 289 30.8
Nitab4.5_0008414g0030 Nicotiana tabacum HOM05D002039 ORTHO05D005369 2.6e-27 126.3 319 29.2
AT1G28340 Arabidopsis thaliana HOM05D002039 ORTHO05D005369 3.4e-27 125.9 321 29.0
MD10G1291000 Malus domestica HOM05D002039 ORTHO05D005369 3.4e-27 125.9 307 30.6
CARHR027830 Cardamine hirsuta HOM05D002039 ORTHO05D005369 4.4e-27 125.6 323 28.8
Ah.09g237510 Amaranthus hybridus HOM05D002039 ORTHO05D005369 5.8e-27 125.2 309 31.1
Potri.004G047300 Populus trichocarpa HOM05D002039 ORTHO05D005369 5.8e-27 125.2 306 30.1
AL1G41940 Arabidopsis lyrata HOM05D002039 ORTHO05D005369 7.6e-27 124.8 321 29.0
arahy.Tifrunner.gnm1.ann1.61YHCL Arachis hypogaea HOM05D002039 ORTHO05D005369 7.6e-27 124.8 318 29.9
Eucgr.E03253 Eucalyptus grandis HOM05D002039 ORTHO05D005369 7.6e-27 124.8 309 29.4
AUR62014853 Chenopodium quinoa HOM05D002039 ORTHO05D005369 9.9e-27 124.4 318 30.8
Peaxi162Scf00461g01116 Petunia axillaris HOM05D002039 ORTHO05D005369 1.3e-26 124.0 313 30.7
Sc05g0007500 Simmondsia chinensis HOM05D002039 ORTHO05D005369 1.3e-26 124.0 317 30.0
Cc02_g13670 Coffea canephora HOM05D002039 ORTHO05D005369 1.7e-26 123.6 315 29.2
Sabra11G0038600 Salix brachista HOM05D002039 ORTHO05D005369 1.7e-26 123.6 331 29.6
HanXRQChr16g0517651 Helianthus annuus HOM05D002039 ORTHO05D005369 2.2e-26 123.2 308 29.2
Sp1g24580 Schrenkiella parvula HOM05D002039 ORTHO05D005369 2.2e-26 123.2 321 28.7
Solyc03g006330.4 Solanum lycopersicum HOM05D002039 ORTHO05D005369 2.2e-26 123.2 308 30.2
Sopen03g002340 Solanum pennellii HOM05D002039 ORTHO05D005369 2.2e-26 123.2 308 30.2
Sopen02g022710 Solanum pennellii HOM05D002039 ORTHO05D005369 3.8e-26 122.5 316 29.7
A09p37720 Brassica napus HOM05D002039 ORTHO05D005369 6.4e-26 121.7 322 28.6
BraA09t39283Z Brassica rapa HOM05D002039 ORTHO05D005369 6.4e-26 121.7 322 28.6
BcaB07g32450 Brassica carinata HOM05D002039 ORTHO05D005369 8.4e-26 121.3 306 28.8
CSS0034765 Camellia sinensis var. sinensis HOM05D002039 ORTHO05D005369 8.4e-26 121.3 316 29.7
COL.COLO4_31433 Corchorus olitorius HOM05D002039 ORTHO05D005369 8.4e-26 121.3 306 29.4
Peaxi162Scf00243g00056 Petunia axillaris HOM05D002039 ORTHO05D005369 1.1e-25 120.9 316 29.4
PGSC0003DMG400012816 Solanum tuberosum HOM05D002039 ORTHO05D005369 1.4e-25 120.6 307 30.0
MSTRG.7349 Avicennia marina HOM05D002039 ORTHO05D005369 1.9e-25 120.2 315 30.2
BcaC05g26843 Brassica carinata HOM05D002039 ORTHO05D005369 1.9e-25 120.2 322 28.3
C05p27240 Brassica napus HOM05D002039 ORTHO05D005369 3.2e-25 119.4 322 28.3
ECA234G4172 Erigeron canadensis HOM05D002039 ORTHO05D005369 5.4e-25 118.6 308 28.6
THA.LOC104820560 Tarenaya hassleriana HOM05D002039 ORTHO05D005369 5.4e-25 118.6 307 28.0
BolC5t31438H Brassica oleracea HOM05D002039 ORTHO05D005369 9.2e-25 117.9 322 28.0
PGSC0003DMG400029712 Solanum tuberosum HOM05D002039 ORTHO05D005369 1.6e-24 117.1 307 29.6
RcHm_v2.0_Chr5g0008961 Rosa chinensis HOM05D002039 ORTHO05D005369 2.7e-24 116.3 307 28.7
Os07g0501800 Oryza sativa ssp. japonica HOM05D002039 ORTHO05D005369 4.6e-24 115.5 318 28.9
Sabra04G0029600 Salix brachista HOM05D002039 ORTHO05D005369 4.6e-24 115.5 319 29.8
SEGI_16004 Sequoiadendron giganteum HOM05D002039 ORTHO05D005369 1.0e-23 114.4 306 26.8
CAN.G529.28 Capsicum annuum HOM05D002039 ORTHO05D005369 1.7e-23 113.6 307 29.3
Rhsim13G0179800 Rhododendron simsii HOM05D002039 ORTHO05D005369 3.0e-23 112.8 358 26.5
EL10Ac8g20423 Beta vulgaris HOM05D002039 ORTHO05D005369 3.9e-23 112.5 305 29.5
Lsat_1_v5_gn_4_52181 Lactuca sativa HOM05D002039 ORTHO05D005369 5.1e-23 112.1 308 28.2
AUR62017049 Chenopodium quinoa HOM05D002039 ORTHO05D005369 2.5e-22 109.8 357 28.0
FAN16G0204 Fragaria x ananassa HOM05D002039 ORTHO05D005369 4.3e-22 109.0 263 30.8
TWI38G1298 Tripterygium wilfordii HOM05D002039 ORTHO05D005369 7.3e-22 108.2 251 31.5
Nitab4.5_0011102g0020 Nicotiana tabacum HOM05D002039 ORTHO05D005369 9.6e-22 107.8 227 32.6
FAN11G1708 Fragaria x ananassa HOM05D002039 ORTHO05D005369 2.1e-21 106.7 263 30.4
Gohir.A09G073200 Gossypium hirsutum HOM05D002039 ORTHO05D005369 2.1e-21 106.7 250 30.8
Gorai.006G087900 Gossypium raimondii HOM05D002039 ORTHO05D005369 2.8e-21 106.3 250 30.4
FAN25G2208 Fragaria x ananassa HOM05D002039 ORTHO05D005369 3.6e-21 105.9 263 30.4
Hund21210 Selenicereus undatus HOM05D002039 ORTHO05D005369 8.1e-21 104.8 292 28.1
Atru.chr10.1828 Acer truncatum HOM05D002039 ORTHO05D005369 4.0e-20 102.4 78 61.5
FAN21G1480 Fragaria x ananassa HOM05D002039 ORTHO05D005369 1.5e-19 100.5 278 28.8
CDE01G0589 Ceratophyllum demersum HOM05D002039 ORTHO05D005369 7.6e-19 98.2 82 58.5
Psat4g204200 Pisum sativum HOM05D002039 ORTHO05D005369 7.6e-19 98.2 243 31.3
Cpa.g.sc27.21 Carica papaya HOM05D002039 ORTHO05D005369 4.9e-18 95.5 82 57.3
arahy.Tifrunner.gnm1.ann1.8I5M3N Arachis hypogaea HOM05D002039 ORTHO05D005369 8.4e-18 94.7 82 59.8
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.4e-17 94.0 96 52.1
Sed0020441 Sechium edule HOM05D002039 ORTHO05D005369 1.9e-17 93.6 82 56.1
Sc17g0006050 Simmondsia chinensis HOM05D002039 ORTHO05D005369 1.9e-17 93.6 81 56.8
arahy.Tifrunner.gnm1.ann1.V7QGVL Arachis hypogaea HOM05D002039 ORTHO05D026939 3.2e-17 92.8 90 53.3
DCAR_004055 Daucus carota HOM05D002039 ORTHO05D005369 4.2e-17 92.4 360 25.8
vmacro03908 Vaccinium macrocarpon HOM05D002039 ORTHO05D005369 4.2e-17 92.4 393 23.7
Lj2C291T4 Lonicera japonica HOM05D002039 ORTHO05D005369 9.3e-17 91.3 81 55.6
arahy.Tifrunner.gnm1.ann1.WU9FE7 Arachis hypogaea HOM05D002039 ORTHO05D026939 1.2e-16 90.9 83 55.4
FvH4_3g08800 Fragaria vesca HOM05D002039 ORTHO05D005369 2.7e-16 89.7 96 50.0
arahy.Tifrunner.gnm1.ann1.L8ME0D Arachis hypogaea HOM05D002039 ORTHO05D026939 6.0e-16 88.6 93 50.5
CDE01G0283 Ceratophyllum demersum HOM05D002039 ORTHO05D005369 1.6e-13 80.5 169 32.5
Pp3c7_20780 Physcomitrium patens HOM05D002039 ORTHO05D005369 1.6e-13 80.5 303 25.1
HPP92_014191 Vanilla planifolia HOM05D002039 ORTHO05D005369 5.3e-12 75.5 94 45.7
Pp3c2_37290 Physcomitrium patens HOM05D002039 ORTHO05D005369 2.6e-11 73.2 305 24.6
Pp3c16_5720 Physcomitrium patens HOM05D002039 ORTHO05D005369 4.5e-11 72.4 306 25.8
Mapoly0037s0073 Marchantia polymorpha HOM05D002039 ORTHO05D005369 2.2e-10 70.1 308 25.6
Pp3c27_5920 Physcomitrium patens HOM05D002039 ORTHO05D005369 1.9e-09 67.0 73 45.2
Lj2P280T37 Lonicera japonica HOM05D002039 ORTHO05D005369 4.2e-09 65.9 77 41.6
arahy.Tifrunner.gnm1.ann1.DG5TA8 Arachis hypogaea HOM05D002039 ORTHO05D083419 5.4e-09 65.5 79 43.0
Pp3c3_10220 Physcomitrium patens HOM05D002039 ORTHO05D005369 2.1e-08 63.5 95 37.9
Lsat_1_v5_gn_6_52801 Lactuca sativa HOM05D004747 ORTHO05D006051 1.3e-07 60.8 56 55.4
Pp3c13_11270 Physcomitrium patens HOM05D002039 ORTHO05D005369 1.3e-07 60.8 95 36.8
Cpa.g.sc27.19 Carica papaya HOM05D002039 ORTHO05D005369 1.8e-07 60.5 163 28.8
Mapoly0013s0069 Marchantia polymorpha HOM05D002039 ORTHO05D005834 1.8e-07 60.5 255 25.9
Nn4g23736 Nelumbo nucifera HOM05D002039 ORTHO05D005834 1.8e-07 60.5 73 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4839 Anthoceros agrestis HOM05D002039 ORTHO05D005369 3.9e-07 59.3 311 23.8
DCAR_024226 Daucus carota HOM05D002069 ORTHO05D001421 5.1e-07 58.9 79 39.2
Pp3c9_7920 Physcomitrium patens HOM05D002039 ORTHO05D005369 5.1e-07 58.9 307 24.8
Phvul.003G027500 Phaseolus vulgaris HOM05D002039 ORTHO05D005834 6.7e-07 58.5 96 34.4
Pp3c26_12890 Physcomitrium patens HOM05D002039 ORTHO05D005369 8.7e-07 58.2 74 36.5
Duzib147G1056 Durio zibethinus HOM05D000094 ORTHO05D001414 1.1e-06 57.8 68 51.5


User provided reference genes

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