Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.7e-57 225.7 111 100.0
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.6e-53 211.8 111 94.6
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 3.9e-49 198.0 111 82.9
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 5.1e-49 197.6 109 81.7
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.3e-48 194.5 111 82.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.3e-48 194.5 111 79.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.3e-48 194.5 111 81.1
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.3e-48 194.5 109 80.7
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.6e-47 192.6 111 78.4
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 4.7e-47 191.0 111 79.3
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 6.2e-47 190.7 109 78.9
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 8.1e-47 190.3 111 77.5
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 8.1e-47 190.3 111 76.6
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.1e-47 190.3 111 76.6
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 8.1e-47 190.3 111 76.6
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 8.1e-47 190.3 111 76.6
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.1e-46 189.9 109 78.9
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 1.1e-46 189.9 111 78.4
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.1e-46 189.9 111 79.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.1e-46 189.9 111 78.4
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.1e-46 189.9 110 81.8
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.1e-46 189.9 109 79.8
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.8e-46 189.1 111 75.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.8e-46 189.1 111 78.4
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 3.1e-46 188.3 111 79.3
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.0e-46 188.0 106 79.2
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.0e-46 188.0 111 76.6
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 4.0e-46 188.0 108 77.8
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.0e-46 188.0 109 78.9
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.0e-46 188.0 109 78.9
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 5.2e-46 187.6 111 76.6
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 6.9e-46 187.2 109 76.1
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 6.9e-46 187.2 111 77.5
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 6.9e-46 187.2 111 76.6
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.9e-46 187.2 109 77.1
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 6.9e-46 187.2 110 77.3
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.2e-45 186.4 108 77.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.2e-45 186.4 108 77.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.2e-45 186.4 111 78.4
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.5e-45 186.0 111 75.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.5e-45 186.0 108 77.8
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.5e-45 186.0 111 76.6
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 2.0e-45 185.7 108 77.8
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-45 185.3 108 75.9
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.6e-45 185.3 109 79.8
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.6e-45 185.3 111 75.7
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 3.4e-45 184.9 111 77.5
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.4e-45 184.9 111 75.7
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 3.4e-45 184.9 110 79.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.4e-45 184.9 111 75.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 4.4e-45 184.5 111 74.8
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.8e-45 184.1 108 75.9
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 7.6e-45 183.7 111 74.8
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 7.6e-45 183.7 111 75.7
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 9.9e-45 183.3 109 74.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 9.9e-45 183.3 109 75.2
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.2e-44 182.2 109 75.2
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 2.2e-44 182.2 109 77.1
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 2.9e-44 181.8 108 75.9
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 2.9e-44 181.8 110 73.6
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-44 181.4 108 75.0
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 3.8e-44 181.4 109 78.9
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 3.8e-44 181.4 111 74.8
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.9e-44 181.0 111 73.9
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 4.9e-44 181.0 111 73.0
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 6.4e-44 180.6 111 74.8
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 8.4e-44 180.3 113 75.2
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 8.4e-44 180.3 111 73.0
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 8.4e-44 180.3 103 79.6
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.4e-43 179.5 111 72.1
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.9e-43 179.1 111 72.1
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.2e-43 177.9 111 72.1
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 4.2e-43 177.9 111 75.7
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 4.2e-43 177.9 111 71.2
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 5.4e-43 177.6 111 70.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 7.1e-43 177.2 109 71.6
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.1e-43 177.2 113 73.5
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 9.3e-43 176.8 103 75.7
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 9.3e-43 176.8 111 71.2
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 9.3e-43 176.8 111 71.2
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.2e-42 176.4 111 70.3
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.2e-42 176.4 111 73.9
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.2e-42 176.4 109 70.6
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.1e-42 175.6 112 72.3
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.1e-42 175.6 111 73.0
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 2.7e-42 175.3 109 74.3
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.5e-42 174.9 111 73.0
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.6e-42 174.5 108 72.2
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 6.0e-42 174.1 111 70.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 6.0e-42 174.1 111 73.0
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.0e-41 173.3 110 70.9
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.0e-41 173.3 111 70.3
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.3e-41 172.9 109 70.6
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.7e-41 172.6 107 73.8
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.7e-41 172.6 111 72.1
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 2.3e-41 172.2 111 69.4
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.3e-41 172.2 105 72.4
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 3.0e-41 171.8 108 70.4
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.9e-41 171.4 111 73.0
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-41 171.4 111 70.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 5.1e-41 171.0 108 69.4
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 5.1e-41 171.0 111 70.3
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 5.1e-41 171.0 111 67.6
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.5e-40 169.5 111 69.4
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.5e-40 169.5 108 69.4
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.5e-40 169.5 108 69.4
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.5e-40 169.5 111 67.6
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.5e-40 169.5 111 68.5
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-40 169.1 111 67.6
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.9e-40 169.1 109 67.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.9e-40 169.1 109 67.9
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 2.5e-40 168.7 110 66.4
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.3e-40 168.3 103 72.8
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 4.3e-40 167.9 108 69.4
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 4.3e-40 167.9 108 70.4
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 5.6e-40 167.5 109 70.6
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 7.3e-40 167.2 108 67.6
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 7.3e-40 167.2 109 69.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 9.6e-40 166.8 109 69.7
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.1e-39 165.6 111 66.7
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.1e-39 165.6 111 68.5
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.8e-39 164.5 111 68.5
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.4e-38 162.9 109 67.9
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.8e-38 162.5 109 67.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.0e-38 161.4 106 69.8
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 2.0e-37 159.1 126 59.5
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.8e-36 154.8 113 68.1
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.9e-36 154.5 113 68.1
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.4e-36 154.1 110 64.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.2e-34 149.8 108 65.7
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.1e-34 149.1 116 62.1
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.5e-34 148.3 111 63.1
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 7.9e-34 147.1 102 59.8
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 1.8e-30 136.0 75 80.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-29 132.9 78 79.5
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 5.8e-29 131.0 75 80.0
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 7.6e-29 130.6 83 72.3
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.1e-27 126.7 111 52.3
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.3e-25 119.8 73 74.0
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.0e-25 118.6 67 80.6
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-25 118.2 65 83.1
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 4.0e-22 108.2 107 43.9
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.0e-21 105.9 103 45.6
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-16 89.4 63 66.7
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 9.0e-14 80.5 79 51.9
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 4.3e-08 61.6 33 90.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 4.1e-06 55.1 33 72.7
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 5.3e-06 54.7 33 72.7


User provided reference genes

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