Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.0e-235 819.7 408 100.0
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 1.9e-141 506.5 424 63.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.1e-138 497.3 368 64.1
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.4e-136 489.6 366 64.2
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.5e-135 485.3 357 64.4
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 2.9e-134 482.6 366 62.8
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 6.5e-134 481.5 366 62.8
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.1e-133 480.7 366 63.9
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 2.5e-133 479.6 368 62.5
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 4.2e-133 478.8 367 60.8
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 9.3e-133 477.6 368 63.0
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 1.2e-132 477.2 363 62.3
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.0e-131 474.2 363 62.3
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 1.8e-131 473.4 403 55.6
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 6.7e-131 471.5 363 61.7
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 8.7e-131 471.1 362 61.3
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.5e-130 470.3 363 61.7
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 3.3e-130 469.2 366 59.0
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 3.3e-130 469.2 364 61.8
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 5.7e-130 468.4 366 59.6
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 7.4e-130 468.0 367 59.7
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 7.4e-130 468.0 370 60.8
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 7.4e-130 468.0 370 60.8
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.6e-129 466.8 367 59.7
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 2.8e-129 466.1 364 59.3
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 3.7e-129 465.7 366 59.6
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 4.8e-129 465.3 414 58.0
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 6.3e-129 464.9 366 59.3
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 8.2e-129 464.5 362 62.2
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.1e-128 464.2 358 59.5
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 1.1e-128 464.2 369 59.1
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.4e-128 463.8 366 59.0
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.8e-128 463.4 367 60.2
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 1.8e-128 463.4 407 57.2
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 2.4e-128 463.0 416 56.5
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 5.3e-128 461.8 418 53.6
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 6.9e-128 461.5 338 63.6
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 9.0e-128 461.1 405 57.0
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 1.2e-127 460.7 370 59.5
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 2.6e-127 459.5 367 60.2
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 4.5e-127 458.8 347 63.4
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 5.9e-127 458.4 356 61.2
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 5.9e-127 458.4 411 54.3
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 5.9e-127 458.4 372 61.0
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 7.7e-127 458.0 356 59.6
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 1.0e-126 457.6 403 55.8
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.7e-126 456.8 377 57.3
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 2.2e-126 456.4 368 59.2
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 5.0e-126 455.3 366 58.7
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.1e-125 454.1 418 55.7
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 2.5e-125 453.0 396 57.1
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 2.5e-125 453.0 361 60.9
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 3.2e-125 452.6 362 58.8
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 4.2e-125 452.2 366 58.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 9.4e-125 451.1 366 57.9
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 3.6e-124 449.1 369 58.8
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 7.9e-124 448.0 337 63.2
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.0e-123 447.6 404 55.4
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 1.0e-123 447.6 413 55.2
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.4e-123 447.2 359 61.0
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 3.0e-123 446.0 359 60.7
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 5.1e-123 445.3 363 59.2
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 8.8e-123 444.5 393 58.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 1.1e-122 444.1 399 57.6
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.5e-122 443.7 367 56.9
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.5e-122 443.0 357 58.5
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.3e-122 442.6 363 60.6
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 4.3e-122 442.2 363 60.3
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 7.4e-122 441.4 412 53.9
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 9.7e-122 441.0 358 57.3
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 9.7e-122 441.0 364 60.2
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 1.7e-121 440.3 362 58.8
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 3.7e-121 439.1 368 56.5
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 8.2e-121 438.0 368 56.2
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 8.2e-121 438.0 363 60.3
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 2.4e-120 436.4 365 59.2
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 6.9e-120 434.9 365 58.9
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 9.1e-120 434.5 337 59.9
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.0e-119 433.3 356 58.1
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.4e-119 432.6 398 54.8
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 3.4e-119 432.6 356 57.6
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 4.5e-119 432.2 413 54.0
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.0e-118 431.0 404 55.2
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.0e-118 431.0 359 56.5
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 2.2e-118 429.9 409 54.3
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 3.8e-118 429.1 358 56.7
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 8.5e-118 427.9 413 52.3
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 1.1e-117 427.6 407 53.3
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 4.2e-117 425.6 410 54.1
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 2.7e-116 422.9 367 57.5
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 1.8e-115 420.2 361 56.0
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 2.8e-113 412.9 409 53.1
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 6.3e-113 411.8 357 54.9
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 2.6e-111 406.4 330 57.9
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.9e-109 400.2 398 51.0
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 9.4e-109 397.9 396 51.8
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 6.1e-108 395.2 353 53.8
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.3e-107 393.3 368 54.3
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 2.3e-107 393.3 363 54.0
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 2.3e-107 393.3 369 56.1
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 5.2e-99 365.5 391 49.4
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 3.7e-97 359.4 358 53.1
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.3e-97 358.6 399 49.1
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 8.3e-97 358.2 316 53.8
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 9.1e-96 354.8 378 46.8
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 2.2e-94 350.1 366 50.5
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 6.5e-94 348.6 350 50.3
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 7.2e-93 345.1 395 47.6
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 2.7e-92 343.2 379 47.8
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.2e-91 339.0 426 41.8
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-90 335.5 360 49.4
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.0e-86 324.7 408 43.4
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.3e-86 324.3 415 44.8
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 5.5e-85 318.9 292 53.8
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 7.2e-85 318.5 321 53.6
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 4.0e-83 312.8 319 53.0
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 2.0e-82 310.5 334 50.6
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-82 308.9 426 41.5
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 8.0e-76 288.5 281 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 1.3e-73 281.2 346 42.5
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.3e-69 266.5 253 55.7
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 1.2e-63 248.1 194 58.2
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.5e-61 240.4 417 35.0
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 8.9e-59 231.9 347 41.8
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 2.6e-50 203.8 136 69.9
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 1.3e-46 191.4 163 56.4
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 4.0e-43 179.9 153 55.6
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 1.7e-41 174.5 200 48.5
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 1.6e-39 167.9 124 60.5
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 3.5e-39 166.8 452 29.6
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 1.3e-36 158.3 145 54.5
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 1.6e-36 157.9 175 45.1
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 5.3e-35 152.9 143 53.1
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 2.0e-34 151.0 102 62.7
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 7.9e-31 139.0 95 66.3
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 2.3e-30 137.5 347 31.4
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 3.3e-29 133.7 89 67.4
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 5.6e-29 132.9 371 29.1
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 4.0e-27 126.7 83 63.9
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 6.9e-27 125.9 146 45.2
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 7.6e-26 122.5 78 66.7
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.2e-25 120.9 111 55.9
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 2.3e-22 110.9 148 41.9
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 8.4e-17 92.4 55 69.1
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.4e-16 91.7 206 30.1
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 7.1e-16 89.4 96 52.1
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 1.5e-13 81.6 55 69.1
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 1.1e-11 75.5 344 25.6
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.2e-10 72.0 344 25.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.2e-10 72.0 344 23.3
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 2.0e-10 71.2 349 24.9
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 2.0e-10 71.2 351 24.8
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 3.4e-10 70.5 351 26.8
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 5.9e-10 69.7 41 65.9
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 7.7e-10 69.3 344 23.0
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.2e-09 67.8 362 22.1
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 1.4e-08 65.1 339 23.6
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.5e-08 64.3 40 65.0
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 2.5e-08 64.3 382 24.6
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 4.2e-08 63.5 352 24.4
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 7.2e-08 62.8 359 25.1
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 1.2e-07 62.0 51 56.9
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.2e-07 62.0 377 23.3
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.2e-07 62.0 368 22.3
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.7e-07 60.8 343 25.1
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 6.1e-07 59.7 365 22.7
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 7.9e-07 59.3 186 27.4
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 7.9e-07 59.3 132 32.6
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 7.9e-07 59.3 334 23.1
EL10Ac9g21112 Beta vulgaris HOM05D039630 ORTHO05D088904 1.8e-06 58.2 100 38.0
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 2.3e-06 57.8 340 22.6
EL10Ac9g21117 Beta vulgaris HOM05D039630 ORTHO05D090184 3.9e-06 57.0 39 69.2
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.9e-06 57.0 337 22.6


User provided reference genes

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